RnoINT0153461 @ rn6
Intron Retention
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11679721-11680203:-
Coord C1 exon
chr7:11679941-11680203
Coord A exon
chr7:11679858-11679940
Coord C2 exon
chr7:11679721-11679857
Length
83 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TCCCTGGGTTGGGTCCACAGGCT
3' ss Score
7.4
Exon sequences
Seq C1 exon
CTATGGGGACCCTATGCAGTGGGCAGCCTTCCTGGGGACCCCGTTCCTGAGCAGCACGGAGGGCCAGTTGGAGCGTGTGGCACGCATCTATCGCCACCCGTTCTACAACATCTACACGCTGGACTATGACGTGGCGCTGCTGGAGCTGGCGGGGCCTGTGCGCCGTAGCCGCTTGGTGCGACCCATCTGCCTACCAGGTCCCACTCGTCCTCCTGAAGGCGCGCGCTGTGTCATCACTGGCTGGGGTTCGCTGCGAGAAGGAG
Seq A exon
GTAGGCACTTGTGCGCTGGGCGCCGCGCAGGGCGTGTTGGAGGCACTCCCCACCCACACCTACTCCCTGGGTTGGGTCCACAG
Seq C2 exon
GCTCCATGGCGAGGCAGCTGCAGAAGGCTGCGGTGAGGGTCCTCAGTGAACAGACATGTCGCCGCTTCTACCCGGTACAGATCAGCAGTCGTATGTTGTGCGCAGGCTTCCCGCAGGGTGGCGTGGACAGCTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429:ENSRNOT00000049221:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCACTCGTCCTCCTGAAG
R:
CGCACAACATACGACTGCTGA
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]