GgaINT0144949 @ galGal4
Intron Retention
Gene
ENSGALG00000003357 | FKBP8
Description
peptidyl-prolyl cis-trans isomerase FKBP8 [Source:RefSeq peptide;Acc:NP_001241668]
Coordinates
chr28:3660483-3661060:+
Coord C1 exon
chr28:3660483-3660535
Coord A exon
chr28:3660536-3660757
Coord C2 exon
chr28:3660758-3661060
Length
222 bp
Sequences
Splice sites
5' ss Seq
ACGGTGACG
5' ss Score
4.75
3' ss Seq
ACTGTTCCTCTCTCCCGCAGGTC
3' ss Score
14.24
Exon sequences
Seq C1 exon
GGGGGGCGCGCGGCGGCCGTTGCTAGGGGGAGTCCCGGCGCGTGACGGGGACG
Seq A exon
GTGACGTGGGGACCCCCGCCGGGCGCGCGCGCGGGGGAAAAGCACGTGGTGGAGAGGGGCGCGCGGGGCGGTGCTTCCAGGGGCCGGAACCCGTGCCTGGGGCCTCCCCGGTCCGGCCCCGACAACCCCGCCGGGAGAGCCCCGTGCGCTCCGGGGTCGCTCGGGGAGTGCTGGCGGCCTCATCGCGGTGTCCGTAGCACCGACTGTTCCTCTCTCCCGCAG
Seq C2 exon
GTCGCTACTCTCCCTGCTCTGCCACGATGGCTTCCAGCGGAGAGGAGATGAGCAGCGGCTCCCCGGGCCGGGCAGGCAGCGACACCGAACCGCCCGGTCCGGAACCGGCTGCGACCTGCGCCGCTCAGCTGGACGGTGCAGAGGATTTCGAGGTTCTGGAGGAGGATGAGGACGACCTGAGCGAGCTGCCACCGCTGGAGGACGTGGGACGGGCACGGGGACCACTGCGGGAGGACGCCCAGTCCTCAGAGCAAGGCCCGGGGGAAGCAGCTGAGGACCCCCAGGAATGGCTCGATGTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003357:ENSGALT00000005309:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.978
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTGCTAGGGGGAGTCC
R:
GGGCCTTGCTCTGAGGACT
Band lengths:
296-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]