GgaINT0145316 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NRZ0]
Coordinates
chr28:544845-546287:+
Coord C1 exon
chr28:544845-544937
Coord A exon
chr28:544938-546158
Coord C2 exon
chr28:546159-546287
Length
1221 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ACTCTGTCTTCTCCTTGCAGGAC
3' ss Score
13.24
Exon sequences
Seq C1 exon
CCTCTCCTGCCCGCACTGGGCTGGTTCTACCTGCTGGAGCTCTCCTTCTACTGCTCACTGGTTGTCACCCTGCCCTTCGATGTGAAGAGGAAG
Seq A exon
GTAAGTGACAGCAGCACAGCTCTAACCCACTGCATTGGCACCACTCAGCTTCTTGGGAATGCCCAGAAAATCCCCAGCCCTGGAGGCAGCAAGGCAGGCAGCATCTGCTGCAAAGGTGCGAGGGCACTCAGTTCCTGCAGCTCTCCTGCCCACCCCTGAGCCTCACCCTACAGCTTTGTCCCCTATTGCTTTGTCTTTCTGCCTGCAAAGCCAGGGGAGAGCTGTGGCTGACACCAGGACTGTGTGCCCGGCCAAGGGACGACCACTGGCTGGGCACAGCACTGTGGCCCTTCCCTGCTGGGCTCCCAGAACCAGAGGGCTCCGTCCTCCTGATGGGACAGACCAGGGTCCTCTTGATGTACGTATTGCTTGCATGGTGTTTTCTGAGCAGTGGGATGTGCTGGCCTTCTGGGACCCACAGACCCAACAGCCACCTTTGCCCCCTCCCCCACCTGCCTTAGTCTGCAGTATAGGCTGCACAGAGCTGTGGTTCAAACTCGGTTTCATTGATGATTTTTTAATTTGACAATAACATTTTCTTGCTCTGCCCCAGAAATGGACTCTACCCAGCTCTGGCAAGCACGTCCCAGGAGACATGCAGTGACTCTTAAAATTGCCAACCATCCCATAGTGCCTGTAGACAGGCTGATGGTTGGAAAGCTGCAGTGCCTCCCAGGAGCAGCAGGAAGCCACTGTGTGGGCCAGAGCTGGAGCTGGGCTCCTCATGACCTCCGCAGAGCACTCAGGGCTCATGCTTTTGTACCCCAGCACCCTAACCAAGCAGTAGGTGGCTCTGTTCATTGCAGGAGGGTTGGACTACATGGTCTCCAATGATCCCTTCCAACCCAAACAATTCTATGACTACCTTTGCACATATAGGCTTGCCCATGCTGCAAGGTTCTGTTTCCACATGGGAAGGCACATTCCCTACCTGCAGCATCTCCAGCCACCTCCATTGGTTCGTCTCCATGGGCAGAGCTGGGGAGTTGAGGCACTGCCTCCACTGTGGCTACGGGGCAGGTCCTGTCCCCGGCCAAAGGCATCTACTGTTATCACACACAGCTCTTCAATACATGGGAGAGTGAGCCCACATACAGCCTAGGAGGAAAATATGGAGCATTAAGGGCTGATGCCTTGTGGAGGTGTTTGCCACGTCCAGCAATGCAGCACCATCCACAAACAGCCACTGCCAGGTCAAGGCACTCTGTCTTCTCCTTGCAG
Seq C2 exon
GACTTTAAGGAACAGATCATCCACCACATTGCCACCATCACTCTGATCTTTGTATCCTACTGTGCCAACCTGATACGGCTTGGGGTGATGATCATGCTGATCCACGATGCCTCCGATTACCTTCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000406:ENSGALT00000000553:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(15.8=100)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCCTGCCCGCACTG
R:
CTCTAGAAGGTAATCGGAGGCA
Band lengths:
222-1443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]