GgaINT0145342 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NBU4]
Coordinates
chr28:3451296-3451976:+
Coord C1 exon
chr28:3451296-3451447
Coord A exon
chr28:3451448-3451800
Coord C2 exon
chr28:3451801-3451976
Length
353 bp
Sequences
Splice sites
5' ss Seq
AAAGTTAGT
5' ss Score
4.24
3' ss Seq
GATGTTATTCCTTTATTTAGGGT
3' ss Score
8.55
Exon sequences
Seq C1 exon
AGCCAAGCTTTGTCGGCATGGAAATAGTACCTGAAAGTGAGTTTAGTCCAGATGGAGATGATGATAAAATTTATGTGTTCTTCACTGAAACAGCTGTTGAGTTTGAATTCTATGACAAGATTCTGGTGTCCAGAATTGCCCGTATCTGCAAA
Seq A exon
GTTAGTGTTTGAAATACAAAGATTTTGTTTACAGTATTTCAGATGAAGTTTCGTAGTTGAGTGTTTAACATTGTTCTAGCCAAACAAAATTCTGTTCTGTATGTTTTATTCCTGCCTTTTCTCCCTCTTTTATTTTGTGCTAGAACAGAACCAGCTGCTCAGGTTGCATTTGACATTTAAACCTTTTTTCTATGTATTAGAACTGAGATTTGTATTGAAAGGACAACTATATTTTTTTGTACAGCAATGTTATCTATCAGATGATAATCTGTTTACATGTTTGTAAATAGATTGCAATTATTTATATCTATATTCTATGTGTTCCGCAGTGTTGATGTTATTCCTTTATTTAG
Seq C2 exon
GGTGATCTTGGTGGAAAACGCTTACTGCAGAGAAGATGGACTTCATTTTTAAAAGCCCGACTTTCCTGTTCCATTCCAGAACTCAACTTCCATTTCAATATCATTCAGGACGTCTTTTTCCTTAGGAGAGGGAAGTGGCAGGACAGCATCTTTTATGGAATTTTTTCCCAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003058:ENSGALT00000004831:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.5=100)
A:
NA
C2:
PF0140314=Sema=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAGCTTTGTCGGCATG
R:
TCCATAAAAGATGCTGTCCTGCC
Band lengths:
311-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]