GgaINT0145553 @ galGal3
Intron Retention
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:337372-338029:+
Coord C1 exon
chr28:337372-337422
Coord A exon
chr28:337423-337913
Coord C2 exon
chr28:337914-338029
Length
491 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TTTTGCTTTGCTGCCAACAGATG
3' ss Score
9.03
Exon sequences
Seq C1 exon
ATACTGCCTGTCCCCGGGGCTATGCCAGGATGAAGGGGGTTACTTGTGAAG
Seq A exon
GTAAAGTGCTGCAGGACACAGAAGACTTTTTAACTGGGAACATAGTCATTGTTTATTTGCTATTTTTATGCATCTTTGAGTTTGGACACAGCCTGCTGAAGCCCTGTGATTTTTGTGCTGTCTCTTGCTTTGGCACCTGCCCTGAGCACTGCAGCTGAGGTATGGGCAGTATGTAACACCAGTGTGTTCAGACACAGTACTGATGTCTGTGAGTCCTGGTGTTTCTCTGTCAGCACTGTATCAACTGCGGACCTGTGCAATAGGACTGCCCTCTGCCTGCTCATGTCTGACACTGTGATACAGCCTCCTTGCAAACATCTCTGCACGTGACTGTGGCTGTGCCTGGAGGATGTTTTGCAGTGTGACAAGCCACCAGTTTCAGCCAGTTGGGCAGCTCTGGGCTCTTTCTGGATCCCTAGGAGCCCCTCAAAGCCATGGTAGTCGTGACTATGTGCCACTCTCATGCCTGCCTTTTGCTTTGCTGCCAACAG
Seq C2 exon
ATGTGAATGAGTGTGATGTCTTTCCTGGTGTCTGCCCAAATGGTCGCTGTGTGAACACAGCTGGCTCCTTTCGGTGTGAGTGTCCAGAAGGATTGACCCTCGATGGCACTGCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327:ENSGALT00000000433:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(17.1=38.9),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=PU(95.0=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]