GgaINT0145555 @ galGal4
Intron Retention
Gene
ENSGALG00000000327 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr28:365625-366689:+
Coord C1 exon
chr28:365625-365750
Coord A exon
chr28:365751-366461
Coord C2 exon
chr28:366462-366689
Length
711 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CAGCTCTGCTCTCTCACCAGATG
3' ss Score
8.8
Exon sequences
Seq C1 exon
ATGTGAATGAGTGTGATGTCTTTCCTGGTGTCTGCCCAAATGGTCGCTGTGTGAACACAGCTGGCTCCTTTCGGTGTGAGTGTCCAGAAGGATTGACCCTCGATGGCACTGCTAGGACGTGTGTGG
Seq A exon
GTAAGAACACTTCATCTCATCCAGACTCCTGATCCCTGTCATCCATCCCTACATAGCCCCAACCATTCCCTCTCCCACCACACGCTGTCACTCAGTTCCCAATACTGCTGCTGTCTGGAGCACAAAATAATCATTAGGAGCTGCCAAACCAAGCCATCCCATCAAAGCTAATCTGCCACAGCTACATGCCCCCATATCCAGCCAGTAGTGCAGTCGTTGTTATTAGGTAGACTTAATGGGTAACCAGTTCTGTGTGCTGCATTTTCAAGGGTCCACTGCTTCTGATCATTGTTGGCTGTTACAGCGATTACACTTTAAATAGATGATGTAACAGTATTAGTTAATGACCCTGCCCTGGACCCTTAAAGAAACTTCTGCCTGCTTTCTTGGCACACCATGACAACCCCGTGCCCTTCACAGGGCATCTGCATTAGTAGCTGCCTATGAAGAGCCCATTCTGTGCCCCAGTACCAGCAGTCACAGGCCAGCCACATCCATTCTAATAATCTTTATTAGCATCCCAACCAAGGCGGCCGTATCAAAATGGCCCATACCTGAGTATTGTAGGGAGAATGCATTCTGGCCCCAGCCAAAGCTATTTTAAGGACAGTGCTAACTGTGCCACAGAGCTATTGTTCCAGAAAATGGTATCTCTGGCCTTCCCAGAGATCAGGTGCTGCAGGAAAGGACTCAGCTCTGCTCTCTCACCAG
Seq C2 exon
ATGTGCGTGTGGAACAGTGCTACATGAAGTGGGATGAAGATGAGTGCACAGAGCCTCTGCCGGGCAAGTACCGGATCGACATGTGCTGCTGTTCTGTGGGCTCAGCCTGGGGCATCGATTGTGAAGAATGTCCTAAGGTTGGTTCTAATGAGTACAAGGCCATCTGCCCAAGGGGACCTGGCTTTGCCAACCGAGGGGACGTGCTTTCAGGCAGGCCCTTCTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327:ENSGALT00000000433:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
NA
C2:
PF0068312=TB=WD(100=54.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGATGTCTTTCCTGGTGT
R:
CTTTGTAGAAGGGCCTGCCTG
Band lengths:
345-1056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]