GgaINT0145585 @ galGal3
Intron Retention
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:358529-359316:+
Coord C1 exon
chr28:358529-358648
Coord A exon
chr28:358649-359193
Coord C2 exon
chr28:359194-359316
Length
545 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCCTCTCTTCTGCCTCCCAGATA
3' ss Score
9.69
Exon sequences
Seq C1 exon
ATACAGATGAATGCTCCATCGGCAACCCCTGTGGGAATGGTACCTGCACCAACGTGGTGGGAGGCTTCGAATGCGCCTGTGATGAGGGCTTTGAGCCAGGGCCCATGATGACATGTGAAG
Seq A exon
GTAAGGCTGCCGTGGGGCTGCCCCTTCACCCCGCCTTGCAGAGCTGCAGATGGGAGAAACCAGGGAAATCCCTTCCTGCCTGCCACTCTCCTGCTCTCTTGGTTCCCACAGTGTCCTTCACCCCCCTACCTCCATAGACACTTGTACAAAAATTGGATTGTTGTCCCGGAAAACTGCAGCCACATCCAGGCCATGTGCATGCCCCCAGTTGGTTCACTGCCTGGCTGAGTGAGCAGCAGTCAGGTCAGCATCTCCTTCGGCTTCCTCTGAGGTTGGTGCTCAGGGTGAGTGTTGGAGGCCAACCTGAAGGCAGTAGCTGCCTCACCAAGGATCCAGGATCCTGTTCCCATCAGAGGGGCTCAGTCACCTGCTGTGTGTCCCTTTACAACTGCAGACAGTGACAGGAAGCCTTGGTGAAGCACAGAAAATTCTCATGAGATGAATGCACAGAAGGGAAGTCTGACCTGGGCAGTCTACTGACGTTACTGTCACCTGATCCTGCTCAGAGTGCAGAGTCAAGCTCTCTCCTCTCTTCTGCCTCCCAG
Seq C2 exon
ATATTAATGAGTGCGCATCGAATCCTTTGCTTTGTGCCTTCCGCTGCATCAACACCTTTGGCTCCTATGAGTGCACGTGTCCATCTGGATACGCCCTCCGAGATGACAGAAGAATGTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327:ENSGALT00000000433:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGAATGCTCCATCGGC
R:
TGCACATTCTTCTGTCATCTCGG
Band lengths:
238-783
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]