HsaINT0062548 @ hg38
Intron Retention
Gene
ENSG00000142449 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr19:8087825-8088179:-
Coord C1 exon
chr19:8088060-8088179
Coord A exon
chr19:8087948-8088059
Coord C2 exon
chr19:8087825-8087947
Length
112 bp
Sequences
Splice sites
5' ss Seq
AGGGTACAA
5' ss Score
1.91
3' ss Seq
ACCTCCACTGGCCTCCCCAGACA
3' ss Score
7.01
Exon sequences
Seq C1 exon
ACACAGACGAGTGCTCTGTCGGCCACCCCTGTGGGCAAGGGACATGCACCAATGTCATCGGAGGCTTCGAATGTGCCTGTGCTGACGGCTTTGAGCCTGGCCTCATGATGACCTGCGAGG
Seq A exon
GTACAACTCTGCTTGCCCAGGACCTGGGCCGTGTGACGGAGATGCCTGGGGGAGGGAGTGGAGGTCCCGCCCTCAGTCCCTACCCAGCTGGCACCTCCACTGGCCTCCCCAG
Seq C2 exon
ACATCGACGAATGCTCCCTGAACCCGCTGCTCTGTGCCTTCCGCTGCCACAATACCGAGGGCTCCTACCTGTGCACCTGTCCAGCCGGCTACACCCTGCGGGAGGATGGGGCCATGTGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142449:ENST00000600128:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGACGAGTGCTCTGTCG
R:
CTCGACACATGGCCCCATC
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development