GgaINT0145590 @ galGal3
Intron Retention
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:362245-363548:+
Coord C1 exon
chr28:362245-362370
Coord A exon
chr28:362371-363425
Coord C2 exon
chr28:363426-363548
Length
1055 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GCTTTGCCTCTCAATTCCAGATC
3' ss Score
9.9
Exon sequences
Seq C1 exon
ACATTGATGAGTGCAAGGTTCTGCCCAACCTCTGCAAGAACGGACAGTGCATCAACAGCATTGGCTCCTTCCGCTGCCACTGCAGGCTGGGCTACACAGCAGATATCACAGGCACAGCCTGTGTGG
Seq A exon
GTGAGTTGGGAGCAGGAAACCCATTTATCTGTACAGCCCTTGGCCTCGGTAGGCCTCCCTCTGTCCCTTCTCAGCATGCAAAGAGAAGGTTCTATCTCCCCTTCCCCAGAGCCTGGCTTCCACCTCTGCCCATATGGTCCTGTGTGACCGTGGCAGGGCTGTGCACATTTTGTCCTCTTACATGGCAATACATCAAAGTCATTCCTGCACGGTGCTTAACTCCTCAAAACCCAAGGTCCTTGTCTTGTCCCTCTGACCTCAGGGGTCACAAAGGCAGATAGGGAACATGATCCAAAGATGACAGTCTGTGAGCAGCCACACCTTTTGGTGCAGGGCAGCAGGCTATAGCCAGCCTAAGTGCCACGCAGGTGTTGCCATAAAAGCCACCCCTGGAATCACAGCTGCAAGCATTTGGGAAAGTGTGGAAGGAGATGAAGAGGTGCCACACATCCAGTACTGAGATGGTGTTGAGGACTGTGCTGACAGATGGGTCCTGGACACAGAGTGGAAAAGAGGTCTTAGATCCCAGAAACCAAGCTCTGTGCCCAGGAGGGCAGCTGTGACCTTGAGCACCAAGCCAGGATTTCTCTTTAAACATTTATGATTTCTCCAGGTATGTGCCCTCCAGCCTGGCTCAAAGTTAAGGGCATTTTCAGAGCCCATTGCTGCTGCTCTTTGCTCAGCTAAGGTGACACAGTCCCCAGAAATACAGGGCTGTTGCCGGTACCTGGGAGGAGCTTCCACACATCTCTTCAGCCAGGAGTGAACTGGGCAGGTTGTCAGATCTTCCAGTCACACCACATCCCATATCTGAGCAGGAAGGTGATTCCACTCTTTTCCTTAGGAGGTCTCCTAGCTCTCTTAATGGAAAACATAGATTTGTTTGGGGCAGGGAGTGTCAGAACCCATGTGGCCATATGACTGCTTAGTTTTGTTGAGCCATGAAACCCAGGATCATCTGCATTCAGGAGTCCCTCGATAGCCTAAATGGTCCAATGTGACATGGGGCCCCATCCAGCAGTACAGCTCATGAATGCTTTGCCTCTCAATTCCAG
Seq C2 exon
ATCTGGATGAGTGTAACCAGTCCCCTAAACCATGCAACTTCATCTGCAAGAACACAGAGGGCAGCTACCAGTGCTCGTGCCCACGAGGATATGTTCTGCAAGAAGACGGGAAGATTTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327:ENSGALT00000000433:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAGTGCAAGGTTCTGCC
R:
CTTTGCAAATCTTCCCGTCTTCT
Band lengths:
246-1301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]