GgaINT0145719 @ galGal3
Intron Retention
Gene
ENSGALG00000002672 | SBNO2
Description
NA
Coordinates
chr28:2424660-2429541:-
Coord C1 exon
chr28:2429377-2429541
Coord A exon
chr28:2424753-2429376
Coord C2 exon
chr28:2424660-2424752
Length
4624 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
CTGCCTCCTTTCTGTTGCAGCTG
3' ss Score
12.58
Exon sequences
Seq C1 exon
GACTCTTCATACCTCGATGAGCTCTCCAACAATAACTCTCTCTTCTCATCTCCTGCGGATTCCCTCTCTGACATTGTGGATGCAAAGGACTGCTTGCCTGCTGACAGCCTGAACCACGTGCCAACCATATGGGATGTAAACACGTCACAGCAGAACCAAACAGAG
Seq A exon
GTACGGGTGCTTCTCTCCCATCCTCCCCATCAGGCACTGAGTATCTCAGGCTTCATCCCATGGTGTTTGCCCCACGGAATTAGGAAACACAACTCCCTGCAGGGCTGAAGTTGCAATATGTTGATGTTGATACCAGGAGGCGTATCCCTGAAACATTCAGCATGTGCAGGGTGGCCTGCAACAGGAGCTTGGGAGCGCTGAAGAGACGGACTTGAGGAAAAACACTGTGACGTAGATCATTAACTGTCCCCAGCAACATCCACCGTATGTTTATTTTCCATGGCAAATATTTTACTAATGATGACTAAAACCCAAACTGTTTCAATTTAATTCTGATCGTTTTTGTTTGCTTTGTGAGTCCAAATCCCTGCAAGCTTTTACATCCCTGAGTTTTCCTGGGCACATGATTTCTTGGCAGTCTGAGAGCAACATGCAGTTTTGTGTGTTTTTACCAGCTTTCTGCTGTCTGTTTTCCCTCATCTGCTGGGACTGCTTACTCACTGTTGCACAACGTGGTATTGGTCCCTTCTAGCAGCCCCCAGCTGTGGTTGTTGGTGGAACTGATACCATGCACATCTGCTTTCTCAGCTGTCATGGTGAATATCCAGCCCTTCAGCAGGTTCCCTTTGTGGATCATTGTCTCACAGAGATTGTAGGGGGAAAAAAAAAGGAAGGTGAATGCTCCAGAATGCAGTCTGACACACCTGTGCTTTAGTCACTGTTGCATTTTGGGATTTAATTGTGTTTTTAGAGGCTACATTTTGCTGTTAGTAACGTGTCAGACTCTGTATTTCCATGATGAAAGCTGCCTGTGTGTGTCACAGCCTGGCAGTAAGAGACTTGGCAGCAGTTCTGCTCTGAAATGTTACCAGCGTGGCTCAGTGACTGGTTGAGCACTGAAGAAGTGTGGATTGGTGGTGAGGTCCTGGCCTGAGGTTTGGGAAATCAAAGCTCCTATTTGCCTTAGACTTTGTGAGATCTTAGGCAAGCCATGGCAACGCAGGTCCTCAAATCAGATGCCTGAGCTCTTGCTGAACCTGATGAGATCTGATGACCTTTGTAGACCTTTGCAGCATCCTCTTGACCCTCCGTGTGCCTGCAGTTGGTGGCAGGGAGTACCCCTGCCTTCCTTCCTGTCATAAATGTGCAGAAGACCAACAGTGCATGGCTGTGCAGGCAGTCAACATGTGGTCTGGTAGCTTTGAACCAGGCTGAACTTGGAGATGGTTAAGAGGAGGAGGGCTGAGCTGTTTGAACCAAGGAAATGGCCAAAGAGTCCCTTGTCCCATTGCGTGCTGCTCTCCACGTCCTCTTCGAAGCCCTCCTGGTGCCCCTTGCTGTCCTTCAGATCACTGGCATTCAGATAAGGCCAATTAACTCCTTTGAATTCCATTTATAAACGACTTCCTTTTGAAAAGAACCTCTGGCTATTTTAAACATTGTGTTATCTGTGTTCTCTGCCTACAGAGGTGGTGGTTTGTGTTTTGTTTTGTGCTTATTTTTGCTAAGCCTGACATTTCCTGACAAGATGGAAGTGAAATGCAGCCCAGTCAGGAGATTTCAGTTTCATTTTTCCAGGGGAGGTGGTAACATGCAGGATGCTGGATAAATGTTTTCTTGGGTTGACTGATGATGGGCAGCTGATTTATTGCCTTTTTTTTAGTACTCTTTTGGTTTTGTTAGAGGAGACGAGCAAATGGTTGGTTGCAAAATCCTGAGGCAGTGCTAAATTGAGAGGCTCCTTACTGTAACACTTGGTGCAAGACTGGGGCTTGGCTGACATCTTGCACCAATATATGCAAGCTGTTTAAACAATCCTTCCCTATCTCTCTTCACATCATCCTGCCACAATAACATTCCATAAAATTGCAGGGATTTTGGCTTTTGCATACCCAGAGTTAAGCTGCGGTGCAGAACTGTGCATCAGTCGGGCTACACAGTGCACACTTGGGTGGATGTAGTCCCAATGCATTTGGATGCAGTGCATCTGCTCAGCTGTAGCTGTGTGGTCAGCTCTTTGCCCGGGGACAACCAGCAGCCCTGCACTCTGCTGTCAGTGTGGGAGTTCGTTTCCTGAGACAGCATTTCAGTCCCAGATTTGTGCCAAGCAGGAGGAGCAGTCCCCAAAGAGCTCCGGTGATGGGAACATCCACATGACAAATGGGATGCATCCCAGAAGCGAGAGCCCCACATTGCTCTGTGTAGCTACAGGTTGTCCTCTTTAAAAACCAAACCTCTGTGTGCTGTGCAGGGAGAGCTGCTGCCATAAAGAAGAGATGTGTCAATGTGATGGCTCTGTGCATCGTTTCTGAAGTGAGCGTGGAGGGAAGAGCTGCTCCACAGTTAAATATTTGCAGGGGTTTGCAGACAAAATACACTTGCTTAATTTATAACGAAGTTGTGAAATACCTTTTAAAAATAGTTTGTCATCCATTGTGCTTTCTCACGAGAACTCAGAGCCCTCTGTAAGAGTGAGGAAGTGAAGTGCTCCCTCTGAAAGCTCATTGCTGGAACTTTGGTGGCACGCTGCTGCCTTTTTCTCCGTTGAACTAATTCAAAGCACTTCCAAAAAGTGAACCCCCCTCCTCCCAGCTCAGAGGAGGTCATAGTTATGCTGAAGGAAGTTGGCTGGTCAGCCAGATGTGACTGCTGCTTCCCCACAGAAGTCGCAGCAAGAGGGGGCAGAAGGGGGAATGCAAAGAGGGAAGAAGTAGAATAAGGTCCAAATCTATGTGCAGTTGTCAGTGGCTTTACCGAATGTGTTCCCCTGCATGGTGTGTGTGCCTCTTATCTTAATGCTTTTAGAGAAAGGAGAAGATCAGAGAGGAGAGCAAGAGTAGAGAAAGGAAGGAGCTGTCTGAGCTCAGCCTGCAGCAGGATGATGTGTCGCCCAACAGAGCTCCTGGTCCCACCTGGCTTAGTCCTCACAGCTCGTTCTCAGCTCTGGGGTTAGTTCTCAATGCTCTGAAGCAGTGGGAGTTCTGTCCCTTCCTTTGTGATAGCTGAGGTGAAAAGCTGTGTGCCAAGGCTGCACTGCTGCGCTTGGATAGTAGGGATTTGTGTTTTGAAGATAAGGCATTGCAAAACCAGAGCTCCGTTCCCTTCCCACAGAGCTGTGTGCCCTTCCACTGCCACAGGATCAGAGCTTTTCTCTTGCCTAAGAAGCAACTTTTGTACTGAGCTCAGATTTGTAGGTGGAGATGTTTCACCTGCTCTCCAGATTTGTTGGCACTGAAAATAGCTCTTCCGTCCAGCTTCCTTCTGGTAATTCTGACTCAGGCTTCCAGTAATGGAGGGTGGTTTTTTCTTTCTTTTTTTTTTTCTTTCTTTTTAATGTAGAAAAAAAAAAAAAAAAAGGAAATAATAAGAGTGTTTATGCTGAAAAACTTCCCATATTTCACTTCTGCCTGTGGAGCAGGGTCTCTAAGTCTGGTGCTCCCGAAAGGCTATAGACTTGAAGCAGTGCCACTGTTGGAGCTGCTGATTGCTTTGGATGCCACGAGCTGCTGGCTTGACCTTACTCACTGTCGGGAAATTCCAGTGGGATTTTGTTTGTGCGAGGGCAGACAAAGGCTCTCCCCACTTGTGCCTCCCAGCTCCCTGGGCACAGCACGGGCTGGGAAGGCTGGAGCAGCCATTGCCTGGTGCAGCAGCTGGCACTCAGAGCCACCAGGGCCTGGCAGAGCACTGGGTGCTCCGGGTTCCTGGGCTTGGCTGCTGGCAGTGCTGGTGGGCACGGGTGGGCACGAGGGGCAGGTAAAGGCATGCAGGCACTGACTGTCTGAGGCAGCCGATAGCAGTCCTCGACCTCGGACAGGTATTAGTCAGTACTGAGCCACGTTTGCATTCTGGTGCAATTATTTAATTTCCTTGAATGGTGTTTTAATTGCTGAAAGCAAGATTGTAAGATCATTTAGTAAAGGCGTGCCTCAAGGGTAGTTTGTGAGAGGACTGTAAAATGTCACAGTCTGCAATGCTCAGTCCTTTCCCAGGGATGGCTTTGCTTGCAGCTCGGTTCAGCTTTCCTGGTTCTCCCACTTGGGTCCCTTCTCCTGTACCTAGCTTTCTGCTCCCCACCCAGAGCAGTATCTTTCCCCCTTCTGCCAGCAAGCCCAACCCTGGGCTCTCACTTGGACTCAATGGTTCAGAATAAAACCTGTGAACTGTCAGCAAGAATCTGCATGGCTCCTGTTATCCAGGCAAAACAGTGTTTGGGGATGACCTGTCTTAATATTGTGTGGTTATTACTTGGCAGAAGGAGTCCTGCCCTGCAGTTGTGTTCATGCTGTGGGAGGACACCGCGTGTCCCTGCAGCTTCCATCACACGTGGGGATGCACACACTTGTTGCAGGAATGCATTTCCCCAGGTCGGTTATTCCCTGTGTTTGTGTTGATGAAGGCATGTATGGCATTTGCAAGATTTATTAGTTTTCAGGATTACTCCCCAGGGCTTCACATGGAGGAGCAGAAAGTATTAAAGCCCATTGACGCCATCAGAGCATAAGGTCTGAGTACAGAGCACAAATGCCTTTACAGTTGTGTTTCCATCCTTTAATTTGCTGGAGCTGAGGTTGGAGGGCAGAGGATTACAGCTGTTTTCTGACCTGCCTCCTTTCTGTTGCAG
Seq C2 exon
CTGTTCTCACCCAGCAGATCATTCAGTGGCTTAAACAGTTCGGACGACCGCATTCCTGCTGTCCCCAACACCCCACTCCTCATAAGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672:ENSGALT00000004211:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.558 A=NA C2=0.871
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]