GgaINT0145719 @ galGal4
Intron Retention
Gene
ENSGALG00000002672 | SBNO2
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr28:2877548-2882429:-
Coord C1 exon
chr28:2882265-2882429
Coord A exon
chr28:2877641-2882264
Coord C2 exon
chr28:2877548-2877640
Length
4624 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
CTGCCTCCTTTCTGTTGCAGCTG
3' ss Score
12.58
Exon sequences
Seq C1 exon
GACTCTTCATACCTCGATGAGCTCTCCAACAATAACTCTCTCTTCTCATCTCCTGCGGATTCCCTCTCTGACATTGTGGATGCAAAGGACTGCTTGCCTGCTGACAGCCTGAACCACGTGCCAACCATATGGGATGTAAACACGTCACAGCAGAACCAAACAGAG
Seq A exon
GTACGGGTGCTTCTCTCCCATCCTCCCCATCAGGCACTGAGTATCTCAGGCTTCATCCCATGGTGTTTGCCCCACGGAATTAGGAAACACAACTCCCTGCAGGGCTGAAGTTGCAATATGTTGATGTTGATACCAGGAGGCGTATCCCTGAAACATTCAGCATGTGCAGGGTGGCCTGCAACAGGAGCTTGGGAGCGCTGAAGAGACGGACTTGAGGAAAAACACTGTGACGTAGATCATTAACTGTCCCCAGCAACATCCACCGTATGTTTATTTTCCATGGCAAATATTTTACTAATGATGACTAAAACCCAAACTGTTTCAATTTAATTCTGATCGTTTTTGTTTGCTTTGTGAGTCCAAATCCCTGCAAGCTTTTACATCCCTGAGTTTTCCTGGGCACATGATTTCTTGGCAGTCTGAGAGCAACATGCAGTTTTGTGTGTTTTTACCAGCTTTCTGCTGTCTGTTTTCCCTCATCTGCTGGGACTGCTTACTCACTGTTGCACAACGTGGTATTGGTCCCTTCTAGCAGCCCCCAGCTGTGGTTGTTGGTGGAACTGATACCATGCACATCTGCTTTCTCAGCTGTCATGGTGAATATCCAGCCCTTCAGCAGGTTCCCTTTGTGGATCATTGTCTCACAGAGATTGTAGGGGGAAAAAAAAAGGAAGGTGAATGCTCCAGAATGCAGTCTGACACACCTGTGCTTTAGTCACTGTTGCATTTTGGGATTTAATTGTGTTTTTAGAGGCTACATTTTGCTGTTAGTAACGTGTCAGACTCTGTATTTCCATGATGAAAGCTGCCTGTGTGTGTCACAGCCTGGCAGTAAGAGACTTGGCAGCAGTTCTGCTCTGAAATGTTACCAGCGTGGCTCAGTGACTGGTTGAGCACTGAAGAAGTGTGGATTGGTGGTGAGGTCCTGGCCTGAGGTTTGGGAAATCAAAGCTCCTATTTGCCTTAGACTTTGTGAGATCTTAGGCAAGCCATGGCAACGCAGGTCCTCAAATCAGATGCCTGAGCTCTTGCTGAACCTGATGAGATCTGATGACCTTTGTAGACCTTTGCAGCATCCTCTTGACCCTCCGTGTGCCTGCAGTTGGTGGCAGGGAGTACCCCTGCCTTCCTTCCTGTCATAAATGTGCAGAAGACCAACAGTGCATGGCTGTGCAGGCAGTCAACATGTGGTCTGGTAGCTTTGAACCAGGCTGAACTTGGAGATGGTTAAGAGGAGGAGGGCTGAGCTGTTTGAACCAAGGAAATGGCCAAAGAGTCCCTTGTCCCATTGCGTGCTGCTCTCCACGTCCTCTTCGAAGCCCTCCTGGTGCCCCTTGCTGTCCTTCAGATCACTGGCATTCAGATAAGGCCAATTAACTCCTTTGAATTCCATTTATAAACGACTTCCTTTTGAAAAGAACCTCTGGCTATTTTAAACATTGTGTTATCTGTGTTCTCTGCCTACAGAGGTGGTGGTTTGTGTTTTGTTTTGTGCTTATTTTTGCTAAGCCTGACATTTCCTGACAAGATGGAAGTGAAATGCAGCCCAGTCAGGAGATTTCAGTTTCATTTTTCCAGGGGAGGTGGTAACATGCAGGATGCTGGATAAATGTTTTCTTGGGTTGACTGATGATGGGCAGCTGATTTATTGCCTTTTTTTTAGTACTCTTTTGGTTTTGTTAGAGGAGACGAGCAAATGGTTGGTTGCAAAATCCTGAGGCAGTGCTAAATTGAGAGGCTCCTTACTGTAACACTTGGTGCAAGACTGGGGCTTGGCTGACATCTTGCACCAATATATGCAAGCTGTTTAAACAATCCTTCCCTATCTCTCTTCACATCATCCTGCCACAATAACATTCCATAAAATTGCAGGGATTTTGGCTTTTGCATACCCAGAGTTAAGCTGCGGTGCAGAACTGTGCATCAGTCGGGCTACACAGTGCACACTTGGGTGGATGTAGTCCCAATGCATTTGGATGCAGTGCATCTGCTCAGCTGTAGCTGTGTGGTCAGCTCTTTGCCCGGGGACAACCAGCAGCCCTGCACTCTGCTGTCAGTGTGGGAGTTCGTTTCCTGAGACAGCATTTCAGTCCCAGATTTGTGCCAAGCAGGAGGAGCAGTCCCCAAAGAGCTCCGGTGATGGGAACATCCACATGACAAATGGGATGCATCCCAGAAGCGAGAGCCCCACATTGCTCTGTGTAGCTACAGGTTGTCCTCTTTAAAAACCAAACCTCTGTGTGCTGTGCAGGGAGAGCTGCTGCCATAAAGAAGAGATGTGTCAATGTGATGGCTCTGTGCATCGTTTCTGAAGTGAGCGTGGAGGGAAGAGCTGCTCCACAGTTAAATATTTGCAGGGGTTTGCAGACAAAATACACTTGCTTAATTTATAACGAAGTTGTGAAATACCTTTTAAAAATAGTTTGTCATCCATTGTGCTTTCTCACGAGAACTCAGAGCCCTCTGTAAGAGTGAGGAAGTGAAGTGCTCCCTCTGAAAGCTCATTGCTGGAACTTTGGTGGCACGCTGCTGCCTTTTTCTCCGTTGAACTAATTCAAAGCACTTCCAAAAAGTGAACCCCCCTCCTCCCAGCTCAGAGGAGGTCATAGTTATGCTGAAGGAAGTTGGCTGGTCAGCCAGATGTGACTGCTGCTTCCCCACAGAAGTCGCAGCAAGAGGGGGCAGAAGGGGGAATGCAAAGAGGGAAGAAGTAGAATAAGGTCCAAATCTATGTGCAGTTGTCAGTGGCTTTACCGAATGTGTTCCCCTGCATGGTGTGTGTGCCTCTTATCTTAATGCTTTTAGAGAAAGGAGAAGATCAGAGAGGAGAGCAAGAGTAGAGAAAGGAAGGAGCTGTCTGAGCTCAGCCTGCAGCAGGATGATGTGTCGCCCAACAGAGCTCCTGGTCCCACCTGGCTTAGTCCTCACAGCTCGTTCTCAGCTCTGGGGTTAGTTCTCAATGCTCTGAAGCAGTGGGAGTTCTGTCCCTTCCTTTGTGATAGCTGAGGTGAAAAGCTGTGTGCCAAGGCTGCACTGCTGCGCTTGGATAGTAGGGATTTGTGTTTTGAAGATAAGGCATTGCAAAACCAGAGCTCCGTTCCCTTCCCACAGAGCTGTGTGCCCTTCCACTGCCACAGGATCAGAGCTTTTCTCTTGCCTAAGAAGCAACTTTTGTACTGAGCTCAGATTTGTAGGTGGAGATGTTTCACCTGCTCTCCAGATTTGTTGGCACTGAAAATAGCTCTTCCGTCCAGCTTCCTTCTGGTAATTCTGACTCAGGCTTCCAGTAATGGAGGGTGGTTTTTTCTTTCTTTTTTTTTTTCTTTCTTTTTAATGTAGAAAAAAAAAAAAAAAAAGGAAATAATAAGAGTGTTTATGCTGAAAAACTTCCCATATTTCACTTCTGCCTGTGGAGCAGGGTCTCTAAGTCTGGTGCTCCCGAAAGGCTATAGACTTGAAGCAGTGCCACTGTTGGAGCTGCTGATTGCTTTGGATGCCACGAGCTGCTGGCTTGACCTTACTCACTGTCGGGAAATTCCAGTGGGATTTTGTTTGTGCGAGGGCAGACAAAGGCTCTCCCCACTTGTGCCTCCCAGCTCCCTGGGCACAGCACGGGCTGGGAAGGCTGGAGCAGCCATTGCCTGGTGCAGCAGCTGGCACTCAGAGCCACCAGGGCCTGGCAGAGCACTGGGTGCTCCGGGTTCCTGGGCTTGGCTGCTGGCAGTGCTGGTGGGCACGGGTGGGCACGAGGGGCAGGTAAAGGCATGCAGGCACTGACTGTCTGAGGCAGCCGATAGCAGTCCTCGACCTCGGACAGGTATTAGTCAGTACTGAGCCACGTTTGCATTCTGGTGCAATTATTTAATTTCCTTGAATGGTGTTTTAATTGCTGAAAGCAAGATTGTAAGATCATTTAGTAAAGGCGTGCCTCAAGGGTAGTTTGTGAGAGGACTGTAAAATGTCACAGTCTGCAATGCTCAGTCCTTTCCCAGGGATGGCTTTGCTTGCAGCTCGGTTCAGCTTTCCTGGTTCTCCCACTTGGGTCCCTTCTCCTGTACCTAGCTTTCTGCTCCCCACCCAGAGCAGTATCTTTCCCCCTTCTGCCAGCAAGCCCAACCCTGGGCTCTCACTTGGACTCAATGGTTCAGAATAAAACCTGTGAACTGTCAGCAAGAATCTGCATGGCTCCTGTTATCCAGGCAAAACAGTGTTTGGGGATGACCTGTCTTAATATTGTGTGGTTATTACTTGGCAGAAGGAGTCCTGCCCTGCAGTTGTGTTCATGCTGTGGGAGGACACCGCGTGTCCCTGCAGCTTCCATCACACGTGGGGATGCACACACTTGTTGCAGGAATGCATTTCCCCAGGTCGGTTATTCCCTGTGTTTGTGTTGATGAAGGCATGTATGGCATTTGCAAGATTTATTAGTTTTCAGGATTACTCCCCAGGGCTTCACATGGAGGAGCAGAAAGTATTAAAGCCCATTGACGCCATCAGAGCATAAGGTCTGAGTACAGAGCACAAATGCCTTTACAGTTGTGTTTCCATCCTTTAATTTGCTGGAGCTGAGGTTGGAGGGCAGAGGATTACAGCTGTTTTCTGACCTGCCTCCTTTCTGTTGCAG
Seq C2 exon
CTGTTCTCACCCAGCAGATCATTCAGTGGCTTAAACAGTTCGGACGACCGCATTCCTGCTGTCCCCAACACCCCACTCCTCATAAGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672:ENSGALT00000004211:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.419
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]