GgaINT0145742 @ galGal3
Intron Retention
Gene
ENSGALG00000002672 | SBNO2
Description
NA
Coordinates
chr28:2409593-2410028:-
Coord C1 exon
chr28:2409936-2410028
Coord A exon
chr28:2409725-2409935
Coord C2 exon
chr28:2409593-2409724
Length
211 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
CATCAGCTCTACCCCAACAGACA
3' ss Score
4.91
Exon sequences
Seq C1 exon
ATCAGCGTTGACAGAGGACTGAAGTGGGAGGAAGCTTATGAGAAGTCACTGAAACTGACAGGATCCTATGATGGGTTCTACCTCTCCTACAAG
Seq A exon
GTAGGTTCTGGGGCTCTGCCAGGATGACACCTCAGCAGAGAGGATAGTTCCTCAGAGGAGGTCTGTCATGGCCCTTGGGCTGTGTCTGACCTCGTGCTGGGGGCTGGGAGATGCCTCCAAGAGGTGCATCATGGAGAGGGATTAGTTCAGACAAGTATGGGCCTCGGGGGAGAGACCCATGCAACTGTAACCATCAGCTCTACCCCAACAG
Seq C2 exon
ACACGAGGCAACAAATACACCTGTCTGCTGGCAGAGCAGGGCCGTGGCAAGAACTTTATCCTCTACAAGCCAAATATTGGGAAGCAGAGCCAACCTGAGAGCTTGGACAGTCTGCACAAGAAGTATCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672:ENSGALT00000004211:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCGTTGACAGAGGACTGA
R:
TGCCGATACTTCTTGTGCAGAC
Band lengths:
223-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]