MmuINT0139123 @ mm10
Intron Retention
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:80058416-80058732:-
Coord C1 exon
chr10:80058637-80058732
Coord A exon
chr10:80058548-80058636
Coord C2 exon
chr10:80058416-80058547
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTCACCACTCTGGCTCCTAGGTA
3' ss Score
7.1
Exon sequences
Seq C1 exon
CAGATTAGCGTGGACCGCGGTATGAAGTGGGAAGAGGCATTAACTAGGTCGCTGGAGCTCAAAGGTCCCTATGATGGCTTCTACCTCTCCTACAAG
Seq A exon
GTGAGTTGTCCCACTCCTGGTGGCGGTTCCCTGCCAGCCACCTACCGGGAGATCCCGATGGCCCTTGACCTCACCACTCTGGCTCCTAG
Seq C2 exon
GTACGAGGCAGCAAAATGAGCTGCCTCCTGGCAGAACAGAATCGCGGCGAGTATTTCACCGTGTACAAGCCAAACATCGGCAGACAGAGCCAGCTGGAGACCCTGGACAGCCTGTGCCGGAAGTTTCACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673:ENSMUST00000219260:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGGTATGAAGTGGGAAGAG
R:
CTGTCTGCCGATGTTTGGCTT
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types