GgaINT0145873 @ galGal3
Intron Retention
Gene
ENSGALG00000000307 | E1C668_CHICK
Description
NA
Coordinates
chr28:66446-70531:-
Coord C1 exon
chr28:70375-70531
Coord A exon
chr28:66775-70374
Coord C2 exon
chr28:66446-66774
Length
3600 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGA
5' ss Score
8.54
3' ss Seq
TTTTTTTTTTTTTTTTGTAGATG
3' ss Score
11.41
Exon sequences
Seq C1 exon
AGTGCTCTATAACACCTACTACTACTCCATGGAGATATTCCAGCCCTTCTTTGGATACTACTTTGTGAATGCTCTCCTGATAACTCTACAGTTGCTTCACGTCTTCTGGTCCTGCCTCATTATTCATATGGTCTACAAGTTCATGCTCCAGGGCACG
Seq A exon
GTATGAATCAACTTGTAGTCCCTTGCACATCACGTGGGGAGGGAGGGTGCCCTAAAGCTACTTGGGAGCACAGAAGTTTATTTGGGATTGATTCTTTCTTGCACTAATGTAATTGTACATATAGACTCCTATCCATCAGGTAGAAGGGGCACTCAGTAAGCCTAATCCATTCAATACTGCAGCTAGGTATTGCCTGTTTGTCTCTATCAGTCATAGAGCAACCTTCCATGCCTGAAATGCAGCTGTGTAAACTTCAGTGAAATGCATCCCATTCTTTCTGACTACAGCATGTGGCATCTGCTGTGAGACCAAACTGCTGCTCAGCATGAAATTCTTCTCAAAATCAAAGACGTGACCTAATGTCATCAGGTTGGCCATCTGCCAAGGACACAGTCTAGGAGAAACAAGTTCATGCTCTGTGGGAGTTGACCTCATACTCTGGGATGAGTTGTTTTGTTATCCTCCAACTGGGGAATTCTGTCTTAGGAGAACTAAGAACAAGCATGAACAACTTATTTTCGTCCATATTGTCCAGAGCTTCTTTATCAGCCTTCCCTTAAGGTAGCACAGTGCAAATTACTTGCAAATTAAAACCAGAAACTTCACATGCTGCAGAAAATGAAGAGGTAACTGAAGAAGCCCTTCTACTGGTTTCCTAATTCTCATGTGGGGTGAAATGCCACTACAGTTATTACAGTGTTAAATGATGAGGTAATAAATGGCCTTACTAGAAATAAATGAGCCATCAGGAAGGCTGGAGCACATCCAGATTTTTTCATATTTTATCTGTAAGTGTTGTGGTTCAACCCTGGCAGGCACCTAAGTGCCATGCAGCCGCTCACTACTCACCACAGGTGGGATGAGAGACAATCAGAAAGGAAAAAATATGAGAACTGTTGGGTTGAGATGAAGACGGTTTATTCAGTAAAGCAAAACAAGGAATTCATTCACTACTTCCCCTGGACAGGCCACTTCAAAGAAAGTAGGGCTTATTGTGCATAGTGCTTTCTTGGGAGAGAAAACACCGTAACTCTGCACATGCCCTTCTTCCTCCTTTACCTCAGCTTTTATTGCTGATGTTATATGGAATGGAATATCCCTTTGGCCAGTTTGGGTCCACTGTGCTGGTTCTGTCCACTCCTAGCCCCCTGTGCCCACCCAGCTCCTCTCTGGCAGGGCAGTATGAGAAGCAGAAAAGTCCCTGACTCAGTGCTAGCACTGCTCTGTAACAACTAAAACACAGCTACTCTCATCAAATATCCAAAACACAGCATCAGTATTAGGATAAGAGAGCGCTGTCTCCTTTCAGTAGCCTTGAAATTCTCACTCTAGTTCAAAAGTTCATATTCTTTTTATGAGCCTTTCTGACCCCTGTAATTTTCCTCTGTGGCTACAGGTTTATCCACATCACCTTTACATATGGTGTTCTCTAATTCCCAGTAATTAGGGCTCAGCCAAATCCTGAAGTAAGAGGTTTCACTTCCTCATAGAGGCAACCATCTTTTTAGTTCATACAGCTGTCTAGTTCCTTTGGGGACGTTGCTTGGTGTAAGGCCTCAGCCACATTCTGCACCTCTGAATAAAAAACAACCAAAAACACTTAAAAGAGTACTGATTACTAATTGCACTTACACTGCAGATGCAGTGCTCTTTGTGCATAGTTCCTCAACTGCCAATTCCAGAATGACATAGATTGCTCGCAAAATGTGGCATCTCCTATTCTTACTGCTCTTGCAGGCAATATGAATTCAGTGCAAGTTCAGATTCTTACGATTCCTAACTGCTCTGGGATGTGGGGATCTCTAAAAAAGGCTTCAGACTTCAGTCTGCTTAATGTGATCCAAGAAATATCCCCAGAAGAACGTATATAAAAAATCGAGGCTACAGAGTATATCCAGCAATGGACACACTCCTAAGGAAGCTTGCAGCTTCCCCTCAGTTCACTTTCCATCAAGGAGCATTGGCACTGTGAATGGGTTCCCAATTTTGGCATCTTGTATGGCAGAGTAAAAGCAGCCTGAGAAGCCAATGAATATTAGGTTGCTTTCTCTAACCTGTCATTTTGTCACTTCACTTAAGGCAAGGAATTAAATATTTACAAAAGTGGACTACAGATGTCTTGATAGCAAGAGGAAAAAACTGAATATAAATCTGAATGTAGAGTTGAGTATCTTTGTGATGTGGGATGTGCTGCTCCAGCTGGATGCACTTCAGTCTATAGGGCCTGATGAGATTCATCCCAGGGTACTCCAAGAGTTTTCTCAACAGTCTTGGGGGTCTGGAGAGGTCCCACTAAACTGGAAGTTGGCAAACATTCTCCCAGTTTTCAAGAAGGGCAAGAAAAAAGATCATGGTAATTACAGGCCTGTCAGGTTGACTTCAGTGGCTGGAAAGAAAATAGTCTGCACTCACTGATCAGAGCCAACACAGGTTCATGAGAGGAAGGTCCCGTTCGACTCACTTGACAAGGATCCCACCTCATTGACCAAATGAAGCCAGGCAGTGTGATCTCTTTGGATGTCCCCAAGGCTTTTAATGGTCTTTCTCACGGTATCCTTCAGGACAAAATATCCAGCATACAGCTAGACCAAACCATAACGTGATGGGTAAACAGTTGGCTGATGGATTGTGCTTACAGGGTTATGGTAAATGGGGCTACATTAGGCTGGCAGCCAGCTATGGGACTCCATTCTAGGGCCAGTCCTTTTTAATATTTGCTCTGGATACAGGATACAGGACTTGAAGGTAAACTGAGTAAGTCTGTGGATGACATTAAATTGGAGGAGCTGTTGACTCCCTCAGGGTCAGAGAGGCCTTGCAGAGACCTTGACACACAGCAGGGCTGGGAAATCCCCAGCAGCATGAAGTCCAGCAAGAGCAAGGGCCAAATCCTGCCTCTGGGTGTGCAGCCCTGGCAATGGGTACAGGTGGGGGATGAGAGATCAGAGAACAGCCTGCAGAACAGGACCTGGGGGTTCTGGTCGACACCCAATAGGGTCTGAGGCAGCAGAGTGCCCTGGAGCCCCAACACCCCACAGCCCAAAGCTGACAGAGCTCAGGGAGCATTGGGACACTGCTCTCAGCTAAAGGGCTTGGGTGGTGCTGTGGGGCCAGGAGCTGGACTGGGGGATCCTGTGGGTCCCTTCCGACTCAGACTGTGCTGTGATCCTGTGATTCTGTATGCTCTCCATTGCAGAGTGCTCGACTTGCAGCACCCAGGAGGTATTTTCATGTCCCCTTTGGAAAATGTAACATTTAGATGAACTGCCTTCCCCCTTCCTTCTTCTGCACAGTGATGCCCAAAGCAGCAATGTGGATCTCCTCAGTGTGACACGGCTGTCCTCACTCCTGGGCAGCTGTGATCTGGGGCTGCTTCAACCTGTCTGTATAATGTATATCAGGACCACAGTTAAGATTTAATTGGGACAGAAATCAATCTGTTTGCAAAGGTGAACTAAAGCTGAAAGCACACTGCAGAAATGCATGCTGCAGGCAGGTGGCTGAAGGAGCAGTTTCAGCCTGTGGCTCAGCTAGCACTGCTTCTTGTGCACTTCTGCATTTGTACTGCTTCTTATTTACTTTTTTTTTTTTTTTTTGTAG
Seq C2 exon
ATGGAAAAGGACATGAGAAGTGAAACAGAAGAGAGTGACGTGGATGAAGAAAGAGAAAACATGATGGAAAAGGAGAAAAATGGGATTGCACGTTTCAGCAATGTCACGAGCAGCAATTACATCCAGAGGAATGGGTCTGAGCCACTGAACAACAGAGCCCATCTCACCAATGGTCACGTAAAGGAAAGATAGCCTCTGTTCGTGTCTGTCATGAATCCGGTCCACCGTCTTTAGAAGCAGTTTTGCTTGTCGTATAGATATAAAAGATTGCAATTGCAGTATCATAACTGAATTCCTTTTTATTGTAAACAGAATTGTGTATGGTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000307:ENSGALT00000000407:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.381
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]