GgaINT1000008 @ galGal4
Intron Retention
Description
chymotrypsinogen 2-like precursor [Source:RefSeq peptide;Acc:NP_001264565]
Coordinates
chr11:1959409-1959839:-
Coord C1 exon
chr11:1959659-1959839
Coord A exon
chr11:1959543-1959658
Coord C2 exon
chr11:1959409-1959542
Length
116 bp
Sequences
Splice sites
5' ss Seq
ACGGTACCG
5' ss Score
7.03
3' ss Seq
TGCCCCCTGCTCGCTGACAGATG
3' ss Score
8.51
Exon sequences
Seq C1 exon
GTCTTCCGGAACCCCAGCTACAGCTCGCTGACCATCCGCAACGACATCACGCTGATCAAGCTGGCCACCCCAGCACAGCTGAACGCCCGCGTGGCGCCCGTCTGCCTGCCCCAGGCCACCGACGACTTCCCCGGGGGCCTGACCTGCGTCACCACGGGCTGGGGGCTCCTCAACTCCAACG
Seq A exon
GTACCGCGGCCGCGGCCCCATCCCCGTCCTTACCCCCGGCCCAGGGCCGAGCCGGCACTGACGGATGCCCCCGGCACTGACGGATGCCCCCTGCTCTGCCCCCTGCTCGCTGACAG
Seq C2 exon
ATGAGAACACGCCGGCCATCCTGCAGCAAGCGGCCCTTCCCCTGCTCACCAACGCGCAGTGCAAGCAGTACTGGGGCTTCCGCATCTACGACGTGATGGTGTGCGCCGGGGCCGACGGATCCTCCTCCTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000038:ENSGALT00000000051:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACGACATCACGCTGATCA
R:
GCACACCATCACGTCGTAGAT
Band lengths:
248-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]