RnoINT0043253 @ rn6
Intron Retention
Gene
ENSRNOG00000019068 | Ctrb1
Description
chymotrypsinogen B1 [Source:RGD Symbol;Acc:2444]
Coordinates
chr19:43906861-43908079:-
Coord C1 exon
chr19:43907899-43908079
Coord A exon
chr19:43906995-43907898
Coord C2 exon
chr19:43906861-43906994
Length
904 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CATTCCCTGTATCCCTGCAGCCC
3' ss Score
9.41
Exon sequences
Seq C1 exon
GTCTTTAAGAACCCCAAGTTCAATATGTTCACTGTGCGCAATGACATCACTCTGCTGAAGCTGGCCACTCCTGCCCAGTTCTCTGAGACTGTGTCTGCCGTGTGTCTACCCAACGTCGATGATGACTTCCCTCCTGGCACTGTGTGCGCCACCACTGGCTGGGGCAAGACCAAATACAATG
Seq A exon
GTGAGTGTGGCCTTGCTCCAGTGGGAGCTGTTCTTGGGTCAGACTGCCCAGGTGGCAGTGACCCCCCACTGTTTGTCTGTCTTTCTGTCTCCCTTCTTTTTTAAAATTTATTTATTTATTTATTTATTTATCATATATAAGTACATTGTAGCTCTCTTATGACACACCAGAAGAGGGCATCAGATCCCATAACAGATGGTTGTGAGTCACCATGTGGTTGGTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGATGAGCCATCTCTCCAGCCCCATCTTTCCATTTCTTTTTTTTTTCTATTCTTTTTTTTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTGCTACTGAGCCAAATCCCCAACCCCATCTTTCCATTTCTTAATTGAAATCTGTTCATTAAAGCTAAGCAGAGTGGCACACCTTAATCCCCAGTACTTGGGAGGCAAAAGCAGGCAGAGCCCATGAGTTCCAGGCCAGCCAGAGCTACATAATAACACACCGTCCTAAATTTTTTTATTTTTTATTTTAATTTATCAAATTAACAATTATTATGTGTCAATTAAGACAAATTTAAAACTCATCCAACACAAACAAAGGGTTGCTGATAAAATGGGGCCTAAAGGAATCCCTCTGCTCAGCAGGAGGAATTCTCTCTGAGTCCCATAATGGGTCTCTTAAGACTCCAGGCTCCCAGGGTGGGAGCCATGCTCTCTTGAAAGAAATCTTACACACCCACTACCCATGGCCTCAAGGTCCAGGCCCCGCCTGTGGTAGAATCTGACAGAGGCTCTCCTGCCTGAAAGGACCCATGGTGATATCCAGTAGACTGGGAGGCCTAGGGAGCCTGACTCCATTCCCTGTATCCCTGCAG
Seq C2 exon
CCCTCAAGACCCCTGAGAAGCTGCAGCAGGCCGCCCTGCCCATCGTGTCCGAGGCTGACTGCAAGAAGTCCTGGGGTTCCAAGATCACCGATGTGATGATCTGCGCAGGCGCTAGCGGCGTCTCTTCCTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019068:ENSRNOT00000026017:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTTCAATATGTTCACTGTGCG
R:
CATGCAGGAAGAGACGCCG
Band lengths:
302-1206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]