GgaINT1000480 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZ53]
Coordinates
JH376268.1:12587-14977:-
Coord C1 exon
JH376268.1:14859-14977
Coord A exon
JH376268.1:12722-14858
Coord C2 exon
JH376268.1:12587-12721
Length
2137 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
3' ss Seq
CCTCGCTGGTTTTCCCGCAGAGC
3' ss Score
11.03
Exon sequences
Seq C1 exon
ATCAGACCCCGACGCCGACTCGGTTCCTGAAGAACTGCGAGGAGGTGGGGCTGTTCAACGAGCTGGCAAGCTCCTTCGAGCACGAGTTCAAGAAAGCCGCCGAGGATGAGGAGAAAAAG
Seq A exon
GCAAGAGGAGAAGGGCAGTGCTGGGAGCCCAGGATGGGGGCTGTGCTGGAGGGCGCACATGGGACGTCCTGCTGTGTGCGTGGAGGGGTTTTCCTGTGGGGTGACTCTGGATGGCAGTTGGGTGATGGGAGCCCCACTTAGAGCGGGTTGGAAGGGTTTGTTGTTCCCTTGTTGCAAAGGACAGAGAAGCCGTACCCAAACTGCTGTGCAGATCGGGGTGGAAAGGACCAACTCTGGGGGCTCCGGGATCTGAGCCATATCCTTTCTTAACCAATTTGGGTGTCGGACCCCCACTGATGTGCCCCAAAGGCCCCAAGTCCAGGGGGCAGCGCAGGGCTCACCCGGCGCCATCCACATGCAGTGCGTGGCACTGTGAGGGGCTGCGTGCAGGAGGGGCTGCGCTAACAAAGAGCTCCCTCGGCTGCCAGCCGCATCGATCCGGGCTGCCCCCACCGCCCCGGGGCTGAAGGACAGCGGGATCTCATCAGCCGGCGGCTCGTTAAGGACGGTTCCCCCCCCTTCCCTTCTCGAGGACCGGAGGAGCGCAGCTGCGTGCGGGGCTCTTAGGCTGCCACGTGCATTTACGGGTTGATGGATGGACGTCCGTCCGCCCGCAGCCAGCGGCGCTGCTCGGAAATAAAGCGCGGCAGCAGAGCGGCGTAAATCTTCCCCGGGCTGGGGACGGAGGAAGGAGCGCTGCAGAGCGCCTCGCTCTGCTCCTGGCAGCTCCCATCCATCTCCCGCTCGGCGCTGCGGGGCCATGCGGGCCGTTCTCCCCTCTCCACCTTTTGTTCTGCGCGGCGCAGGGTGGAGCTGCGCCCCATTTGTGGTCTGGGGTCCGCGTGGCTGAGCCGCCCGCAGTCTCGCCGCTCCCTTTACAGGGAGACCACCCAGCCCCTCTGCTCTGCAGCCTCCGGCTCTCACACGTCTGCCTTTCAAGTCCTGTTTTTCACTGCAGGCAAAATATTTCCGCCAGCAGTCGGGAGAGCGCGGCGGCTCCGAGCCCAGGGGGTGGTTTGGGCGGAGGGGACCCATTAAGCCTCCCCTAAAAGCTCTGCACGCACCGCAACCCCCCGGCTCTGTGTGCCCCCCCGGAGCTGCTGCTGCATCACTGTGATGCTCCAAGCGGCGGCGGCTGCTGCCAGGTTTTGTCCTCTGGTTCCGAGGGTGGTCCGACAGCGGCGCCTTAATTAAAGCCATGGGAGCAGCGGGAGCTTCCCTGGAGGCACCTTAAGTGGTTCGACATTTCCCTGCATGTTAATCCCTTCTCCTTTGTGCTTCCCATCTCTGCTGAGCAGGGCAGGTACGTGGCCACGAGCTGCGGCGTAAATCAGCGCCAGAGCAGCCCCAGAGGCACAGATTTACCTTTTTGCCTCAATTTTCCCTCCCCGGAGAGGACCTCAGATGCAGCAGAGGAGGAGGTGTGGGTTAGGGGCTGGGCTGGGATGCAGAGCAGGGATGGGGGTGGCGAGCAGCTCTGCATTAGGGGCATTTCTGCCCCAGTGTGATGCTCAGTGCAGGGACGTCTCCATCCGAATCCACCCCGCAGCCCCATCCCTCTCCATCCCTCCCAGCCCCACAGAAGCAGCCGCTCGCTCGTGTCCCCCCACATTGTCACCCTCTTCCCATCCCCACCAGCTCCCCAATGGGCTGAATGGGGGCACGTGGCACTGCAGGAGCCCGGCCCGGCGGCGCGTTGCCATCTGCGGGCATCCGGTCGGGTTTCATTTTAATGGGCAGCCCGTGGATGTGCAATAACTTGCATGGCTCTTTGTTTGCTTTCGGTAATCGGGCAGTAAAAGAATTCAGGCTGATTTATACAGCGCTTTGCAGCCCTTCCTGCAGGTGAAGGTGCCCTCTGTGGCTCGGGGCTTTGTTACCTGCTCTCCTCCGCAGAGCCCCGTTCTGAACAGAGGGATGCAGAGGAGCAGATCTGTGCTCTCAGCACGCCGTGCCGTCGGGGCTCTGTGCGCACAGGGACGGCTCTCAGCCTCGGGCTCCCAGCTGCTGCTTCAGGACCAATAAATAACAGTAATTTGGCAGCTCAGAGCCGCAGCTCTTCCTTTGGGAACCAGCGGCCGTTTGGCAGGCAATGTGAGCTCATTGTCCCCTCAATCCCTCGCTGGTTTTCCCGCAG
Seq C2 exon
AGCACTGCAGCCCTGGACATGTCGCTGCCCTCCACCCCAGACATCAAGATAAAGGAGGAGGAGCCGGTGGAGGTGGACTCGTCCCCCCCAGACAGCCCTGCCTCCAACCCACGGTCACCGCAGACCAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003038:ENSGALT00000004807:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]