GgaEX1000641 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZ53]
Coordinates
JH376268.1:8008-14977:-
Coord C1 exon
JH376268.1:14859-14977
Coord A exon
JH376268.1:12043-12200
Coord C2 exon
JH376268.1:8008-8154
Length
158 bp
Sequences
Splice sites
3' ss Seq
CATCTGTTGACCACCTCTAGGAG
3' ss Score
6.54
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATCAGACCCCGACGCCGACTCGGTTCCTGAAGAACTGCGAGGAGGTGGGGCTGTTCAACGAGCTGGCAAGCTCCTTCGAGCACGAGTTCAAGAAAGCCGCCGAGGATGAGGAGAAAAAG
Seq A exon
GAGATCACCCCCAAGCCCGTGATCATTTCCACACCAACACCAACCATCGTGCGCCCCGGATCGCTGCCACTGCACCTGGGCTACGACCCCCTGCACCCCACGCTGCCTTCCCCAACCTCCGTCATCACCCAGGCCCCGCCGTCCAACAGGCAGCTCGG
Seq C2 exon
AGGCTGAAGGCCAGCTTGACGGCGTCTTCCTCGCTGAACGGCAGCAGCCTGGTGGTGGGCTCAGCCAGCACGATGGTGACCGCGCGCCCGGAGCAGAGCCAGATCCTCGTCCAGCACCCCGACGCTCCATCGCCAGCTCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003038_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.981 C2=0.980
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAAGAACTGCGAGGAGG
R:
CTGAGGCTGAGCTGGCGAT
Band lengths:
242-400
Functional annotations
There are 2 annotated functions for this event
PMID: 25301550
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: two hybrid. ELM ID: ELMI003062; ELM sequence: RPGSLPL; Overlap: FULL
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: fluorescence polarization spectroscopy, protein array. ELM ID: ELMI003062; ELM sequence: RPGSLPL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]