RnoEX0012557 @ rn6
Exon Skipping
Gene
ENSRNOG00000015269 | Atf7
Description
activating transcription factor 7 [Source:RGD Symbol;Acc:1304940]
Coordinates
chr7:144147615-144151250:-
Coord C1 exon
chr7:144151113-144151250
Coord A exon
chr7:144149037-144149194
Coord C2 exon
chr7:144147615-144147714
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTCTCCTCACCCTAGGAA
3' ss Score
11.36
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
AGTGCTGCTGGGCCTCTAGACATGTCTCTGCCTTCTACACCAGACATCAAAGTCAAGGAGGAAGAGCCAGTGGAGGTGGACTCATCACCCCCCGACAGTCCTGCTTCCTGCCCCTGCTCCCCGCCACTGAAAGACAAG
Seq A exon
GAAGTTGCCACAAAACCTGTTGTGATCTCTACCCCTACACCCACCATCGTACGTCCTGGCTCCCTGCCTCTGCACTTAGGTTATGATCCACTTCATCCAACTCTTCCTTCCCCAACCTCTGTCATCACACAGGCTCCACCATCCAACAGGCAAATAGG
Seq C2 exon
ATCTCCTACTGGCTCCCTCCCTCTCGTCATGCATCTTGCTAATGGACAGACCATGCCAATGCTGCCAGGGCCTCCAGTACAGATGCCTTCTGTTATTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015269-'11-10,'11-7,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=0.962 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTGGGCCTCTAGAC
R:
GAAGGCATCTGTACTGGAGGC
Band lengths:
226-384
Functional annotations
There are 2 annotated functions for this event
PMID: 25301550
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: two hybrid. ELM ID: ELMI003062; ELM sequence: RPGSLPL; Overlap: FULL
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: fluorescence polarization spectroscopy, protein array. ELM ID: ELMI003062; ELM sequence: RPGSLPL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]