BtaEX6020300 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005863 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:792]
Coordinates
chr5:26654976-26660516:+
Coord C1 exon
chr5:26654976-26655050
Coord A exon
chr5:26659222-26659379
Coord C2 exon
chr5:26660417-26660516
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTGTTGGTTCTTCTCCCCAGGAT
3' ss Score
10.75
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTGCTTCTGGGCCCCTTGACATGTCTCTGCCTTCTACACCAGACATCAAAATCAAAGAAGAAGAGCCAGTGGAG
Seq A exon
GATGTTGCCCCAAAGCCTGTTGTGATCTCTACTCCCACGCCTACCATCGTACGCCCGGGCTCCCTGCCTCTCCATTTGGGCTATGATCCACTTCACCCAACCCTTCCTTCCCCAACCTCCGTCATCACACAGGCTCCCCCATCTAACAGGCAACTGGG
Seq C2 exon
GTCTCCCACCGGCTCCCTCCCTCTCGTCATGCATCTTGCTAATGGACAGACCATGCCTGTGCTGCCAGGGCCTCCAGTACAGATGCCTTCTGTTATATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005863-'11-9,'11-7,13-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.887 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTGGGCCCCTTGACAT
R:
GAAGGCATCTGTACTGGAGGC
Band lengths:
162-320
Functional annotations
There are 2 annotated functions for this event
PMID: 25301550
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: two hybrid. ELM ID: ELMI003062; ELM sequence: RPGSLPL; Overlap: FULL
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: fluorescence polarization spectroscopy, protein array. ELM ID: ELMI003062; ELM sequence: RPGSLPL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]