GgaEX1000642 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZ53]
Coordinates
JH376268.1:8008-12200:-
Coord C1 exon
JH376268.1:12043-12200
Coord A exon
JH376268.1:10135-10234
Coord C2 exon
JH376268.1:8008-8154
Length
100 bp
Sequences
Splice sites
3' ss Seq
CCCTGGGGCTGTCTTTGCAGGTC
3' ss Score
9.59
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GAGATCACCCCCAAGCCCGTGATCATTTCCACACCAACACCAACCATCGTGCGCCCCGGATCGCTGCCACTGCACCTGGGCTACGACCCCCTGCACCCCACGCTGCCTTCCCCAACCTCCGTCATCACCCAGGCCCCGCCGTCCAACAGGCAGCTCGG
Seq A exon
GTCGCCCACGGGTTCCCTTCCGCTCGTCGTGCAGCTGCCAAACGGGCAGACCATGCCTGTCCTGCCCGGCCCCCCCATGCAGATGCCGTCTGTGATATCG
Seq C2 exon
AGGCTGAAGGCCAGCTTGACGGCGTCTTCCTCGCTGAACGGCAGCAGCCTGGTGGTGGGCTCAGCCAGCACGATGGTGACCGCGCGCCCGGAGCAGAGCCAGATCCTCGTCCAGCACCCCGACGCTCCATCGCCAGCTCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003038_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=1.000 C2=0.980
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCGTGATCATTTCCACAC
R:
TGGACGAGGATCTGGCTCTG
Band lengths:
258-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]