MmuEX6056872 @ mm10
Exon Skipping
Gene
ENSMUSG00000099083 | Atf7
Description
activating transcription factor 7 [Source:MGI Symbol;Acc:MGI:2443472]
Coordinates
chr15:102547154-102551561:-
Coord C1 exon
chr15:102551404-102551561
Coord A exon
chr15:102547773-102547872
Coord C2 exon
chr15:102547154-102547267
Length
100 bp
Sequences
Splice sites
3' ss Seq
ATATTTCATTTCTCCTGCAGATC
3' ss Score
11.12
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GAAGTTACCACAAAACCGGTTGTGATCTCTACCCCTACACCTACCATTGTACGTCCTGGCTCCCTGCCTCTCCACTTAGGTTATGATCCACTTCATCCAACTCTTCCTTCCCCAACCTCTGTCATCACACAGGCTCCACCATCCAACAGGCAAATAGG
Seq A exon
ATCTCCTACTGGCTCCCTCCCTCTCGTCATGCATCTTGCTAATGGACAGACCATGCCTATGTTGCCAGGGCCTCCAGTACAGATGCCTTCTGTTATTTCG
Seq C2 exon
CTGGCCAGACCTGTGTCCATGGTGCCCAACATTCCTGGTATACCTGGCCCACCGGTTAACAACAGTGGCTCCATTTCTCCCTCTGGCCACCCTATGCCGTCAGAAGCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000099083-'10-17,'10-16,13-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=1.000 C2=0.974
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTTGTGATCTCTACCCCT
R:
TTTGGCTTCTGACGGCATAGG
Band lengths:
254-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types