BtaEX6020299 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005863 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:792]
Coordinates
chr5:26659222-26661159:+
Coord C1 exon
chr5:26659222-26659379
Coord A exon
chr5:26660417-26660516
Coord C2 exon
chr5:26661046-26661159
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCACTTTATATCTCCTCTAGGTC
3' ss Score
11.27
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GATGTTGCCCCAAAGCCTGTTGTGATCTCTACTCCCACGCCTACCATCGTACGCCCGGGCTCCCTGCCTCTCCATTTGGGCTATGATCCACTTCACCCAACCCTTCCTTCCCCAACCTCCGTCATCACACAGGCTCCCCCATCTAACAGGCAACTGGG
Seq A exon
GTCTCCCACCGGCTCCCTCCCTCTCGTCATGCATCTTGCTAATGGACAGACCATGCCTGTGCTGCCAGGGCCTCCAGTACAGATGCCTTCTGTTATATCG
Seq C2 exon
CTGGCCAGACCTGTGTCTATGGTGCCCAACATTCCTGGTATCCCTGGCCCACCAGTTAACAGCAGTGGTTCCATTTCTCCCTCTGGCCACCCTATGCCATCAGAAGCCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005863-'13-10,'13-9,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.887 A=1.000 C2=0.921
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCTCTACTCCCACGCCT
R:
GCTTCTGATGGCATAGGGTGG
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]