DreEX0015449 @ danRer10
Exon Skipping
Gene
ENSDARG00000011298 | atf7a
Description
activating transcription factor 7a [Source:ZFIN;Acc:ZDB-GENE-050721-2]
Coordinates
chr23:27529210-27532125:-
Coord C1 exon
chr23:27531968-27532125
Coord A exon
chr23:27531623-27531716
Coord C2 exon
chr23:27529210-27529329
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTACTCGTCTTTCAGGTC
3' ss Score
12.13
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GATTCTCCTCCAAGGCATGCCTTCAGTTCAGCTCCAACCCCAGCCATAGTGCGTCCTGGATCCCTCCCTCTGCACCTGGGTTATGACGGCCTGCATCCCACCATGCCTTCCCCAACCTCCGTCATCACACACACCCCACCATCCAACCGCACACTGGG
Seq A exon
GTCTCCAACAGTGCCATACCCAATGATGATGCTTCCCAATGGTCAAACGGTTCCTGTGCTTCCTGGTCCTATGCAAATGCCCTCTGTAATATCA
Seq C2 exon
TTGGCAAGGCCCTTGTGTATGGTGCCCAACATTCCAGGCATCCCCGGGCCTCCACTAGGGGGCAGCAGCAGCGGTTCGTCTTCACCCTCCGGTTACAACCCTCATGCTGAGGCAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011298-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.875 C2=0.775
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCTCCTCCAAGGCATGCC
R:
CACCATACACAAGGGCCTTGC
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]