MmuEX6056872 @ mm9
Exon Skipping
Gene
ENSMUSG00000052414 | Atf7
Description
activating transcription factor 7 [Source:MGI Symbol;Acc:MGI:2443472]
Coordinates
chr15:102377585-102381992:-
Coord C1 exon
chr15:102381835-102381992
Coord A exon
chr15:102378204-102378303
Coord C2 exon
chr15:102377585-102377698
Length
100 bp
Sequences
Splice sites
3' ss Seq
ATATTTCATTTCTCCTGCAGATC
3' ss Score
11.12
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GAAGTTACCACAAAACCGGTTGTGATCTCTACCCCTACACCTACCATTGTACGTCCTGGCTCCCTGCCTCTCCACTTAGGTTATGATCCACTTCATCCAACTCTTCCTTCCCCAACCTCTGTCATCACACAGGCTCCACCATCCAACAGGCAAATAGG
Seq A exon
ATCTCCTACTGGCTCCCTCCCTCTCGTCATGCATCTTGCTAATGGACAGACCATGCCTATGTTGCCAGGGCCTCCAGTACAGATGCCTTCTGTTATTTCG
Seq C2 exon
CTGGCCAGACCTGTGTCCATGGTGCCCAACATTCCTGGTATACCTGGCCCACCGGTTAACAACAGTGGCTCCATTTCTCCCTCTGGCCACCCTATGCCGTCAGAAGCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052414-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=1.000 C2=0.974
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTTGTGATCTCTACCCCT
R:
TTTGGCTTCTGACGGCATAGG
Band lengths:
254-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: