GgaEX0003942 @ galGal3
Exon Skipping
Gene
ENSGALG00000003038 | ATF7
Description
NA
Coordinates
chrUn_random:38349549-38352576:+
Coord C1 exon
chrUn_random:38349549-38349580
Coord A exon
chrUn_random:38351298-38351397
Coord C2 exon
chrUn_random:38352463-38352576
Length
100 bp
Sequences
Splice sites
3' ss Seq
CCCTGGGGCTGTCTTTGCAGGTC
3' ss Score
9.59
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
ACCCAGGCCCCGCCGTCCAACAGGCAGCTCGG
Seq A exon
GTCGCCCACGGGTTCCCTTCCGCTCGTCGTGCAGCTGCCAAACGGGCAGACCATGCCTGTCCTGCCCGGCCCCCCCATGCAGATGCCGTCTGTGATATCG
Seq C2 exon
CTGGCCCGGCCCGTCTCCATCGTGCCCAACATTCCCGGCATCCCCGGGCCGCCCAGCAGCAGCAGCGGCTCCGTTTCCCCTCCGGGTCTCCCCGTGCACTCGGAAGCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003038-'3-5,'3-4,4-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.895
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCAACAGGCAGCTCG
R:
CATTTTGGCTTCCGAGTGCAC
Band lengths:
133-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]