RnoEX6034338 @ rn6
Exon Skipping
Gene
ENSRNOG00000015269 | Atf7
Description
activating transcription factor 7 [Source:RGD Symbol;Acc:1304940]
Coordinates
chr7:144146994-144149194:-
Coord C1 exon
chr7:144149037-144149194
Coord A exon
chr7:144147615-144147714
Coord C2 exon
chr7:144146994-144147107
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCATTTCATTTCTCCTGCAGATC
3' ss Score
11.53
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GAAGTTGCCACAAAACCTGTTGTGATCTCTACCCCTACACCCACCATCGTACGTCCTGGCTCCCTGCCTCTGCACTTAGGTTATGATCCACTTCATCCAACTCTTCCTTCCCCAACCTCTGTCATCACACAGGCTCCACCATCCAACAGGCAAATAGG
Seq A exon
ATCTCCTACTGGCTCCCTCCCTCTCGTCATGCATCTTGCTAATGGACAGACCATGCCAATGCTGCCAGGGCCTCCAGTACAGATGCCTTCTGTTATTTCG
Seq C2 exon
CTGGCCAGACCTGTTTCCATGGTGCCCAACATTCCTGGTATACCTGGCCCACCAGTTAACAATAGTGGCTCTATTTCTCCCTCTGGCCACCCTATGCCGTCAGAAGCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015269-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=1.000 C2=0.947
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTACCCCTACACCCACCA
R:
TTTGGCTTCTGACGGCATAGG
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]