GgaEX0003943 @ galGal3
Exon Skipping
Gene
ENSGALG00000003038 | ATF7
Description
NA
Coordinates
chrUn_random:38351298-38353524:+
Coord C1 exon
chrUn_random:38351298-38351397
Coord A exon
chrUn_random:38352463-38352576
Coord C2 exon
chrUn_random:38353378-38353524
Length
114 bp
Sequences
Splice sites
3' ss Seq
CGTCGGTTCCTCCCCGTCAGCTG
3' ss Score
6.62
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTCGCCCACGGGTTCCCTTCCGCTCGTCGTGCAGCTGCCAAACGGGCAGACCATGCCTGTCCTGCCCGGCCCCCCCATGCAGATGCCGTCTGTGATATCG
Seq A exon
CTGGCCCGGCCCGTCTCCATCGTGCCCAACATTCCCGGCATCCCCGGGCCGCCCAGCAGCAGCAGCGGCTCCGTTTCCCCTCCGGGTCTCCCCGTGCACTCGGAAGCCAAAATG
Seq C2 exon
AGGCTGAAGGCCAGCTTGACGGCGTCTTCCTCGCTGAACGGCAGCAGCCTGGTGGTGGGCTCAGCCAGCACGATGGTGACCGCGCGCCCGGAGCAGAGCCAGATCCTCGTCCAGCACCCCGACGCTCCATCGCCAGCTCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003038-'4-6,'4-5,6-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.895 C2=0.980
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACGGGTTCCCTTCC
R:
TGAGGCTGAGCTGGCGAT
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]