DreEX0015450 @ danRer10
Exon Skipping
Gene
ENSDARG00000011298 | atf7a
Description
activating transcription factor 7a [Source:ZFIN;Acc:ZDB-GENE-050721-2]
Coordinates
chr23:27528485-27531716:-
Coord C1 exon
chr23:27531623-27531716
Coord A exon
chr23:27529210-27529329
Coord C2 exon
chr23:27528485-27528634
Length
120 bp
Sequences
Splice sites
3' ss Seq
CATTTGGCCCTGTGTTGTAGTTG
3' ss Score
5.65
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTCTCCAACAGTGCCATACCCAATGATGATGCTTCCCAATGGTCAAACGGTTCCTGTGCTTCCTGGTCCTATGCAAATGCCCTCTGTAATATCA
Seq A exon
TTGGCAAGGCCCTTGTGTATGGTGCCCAACATTCCAGGCATCCCCGGGCCTCCACTAGGGGGCAGCAGCAGCGGTTCGTCTTCACCCTCCGGTTACAACCCTCATGCTGAGGCAAAGATG
Seq C2 exon
AGGTTGAAAGCAGCATTATCTCAGCAGACATCCTCCGCTCAGGGTTGTCTTGGTGTGGCGATGGGCTCTAGTGCAATGGTGCCTCAGAGGGTGGAGCAAAGCCAGCTGCTGGTTCAGCATCCAGATGCTCCATCACCTGCTCAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011298-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=0.775 C2=0.927
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAACAGTGCCATACCCA
R:
CTGTGGCTGAGCAGGTGATG
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]