RnoEX0012558 @ rn6
Exon Skipping
Gene
ENSRNOG00000015269 | Atf7
Description
activating transcription factor 7 [Source:RGD Symbol;Acc:1304940]
Coordinates
chr7:144146239-144147714:-
Coord C1 exon
chr7:144147615-144147714
Coord A exon
chr7:144146994-144147107
Coord C2 exon
chr7:144146239-144146391
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGGTCCTTCTCTTGATTTAGCTG
3' ss Score
7.58
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATCTCCTACTGGCTCCCTCCCTCTCGTCATGCATCTTGCTAATGGACAGACCATGCCAATGCTGCCAGGGCCTCCAGTACAGATGCCTTCTGTTATTTCG
Seq A exon
CTGGCCAGACCTGTTTCCATGGTGCCCAACATTCCTGGTATACCTGGCCCACCAGTTAACAATAGTGGCTCTATTTCTCCCTCTGGCCACCCTATGCCGTCAGAAGCCAAAATG
Seq C2 exon
AGACTAAAAGCCACATTGACCCACCAAGTTTCTTCAATCAATGGAGGTTGTGGAATGGTGGTAGGCACTGCAAGCACCATGGTGACAGCCCGTCCAGAGCAGAACCAGATCCTCATCCAGCACCCGGATGCCCCATCCCCTGCCCAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015269-'13-12,'13-11,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.947 C2=0.941
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCTACTGGCTCCCTCCC
R:
GGCAGGGGATGGGGCATC
Band lengths:
244-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]