BtaEX6020298 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005863 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:792]
Coordinates
chr5:26660417-26661890:+
Coord C1 exon
chr5:26660417-26660516
Coord A exon
chr5:26661046-26661159
Coord C2 exon
chr5:26661738-26661890
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTTTCTTGATCTAGCTG
3' ss Score
9.01
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTCTCCCACCGGCTCCCTCCCTCTCGTCATGCATCTTGCTAATGGACAGACCATGCCTGTGCTGCCAGGGCCTCCAGTACAGATGCCTTCTGTTATATCG
Seq A exon
CTGGCCAGACCTGTGTCTATGGTGCCCAACATTCCTGGTATCCCTGGCCCACCAGTTAACAGCAGTGGTTCCATTTCTCCCTCTGGCCACCCTATGCCATCAGAAGCCAAGATG
Seq C2 exon
AGACTAAAAGCTACCCTAACCCACCAAGTCTCCTCAATCAATGGTGGTTGTGGAATGGTGGTGGGGACTGCCAGCACCATGGTGACAGCCCGTCCAGAGCAAAGCCAGATCCTCATCCAGCACCCTGACGCCCCATCCCCGGCCCAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005863-'15-11,'15-10,16-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.921 C2=0.941
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCCACCGGCTCCCTC
R:
GGATGGGGCGTCAGGGTG
Band lengths:
237-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]