HsaEX6066850 @ hg19
Exon Skipping
Gene
ENSG00000170653 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:792]
Coordinates
chr12:53925528-53927043:-
Coord C1 exon
chr12:53926944-53927043
Coord A exon
chr12:53926294-53926407
Coord C2 exon
chr12:53925528-53925680
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTCTCTCGATCCAGCTG
3' ss Score
10.22
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTCTCCCACTGGCTCCCTCCCTCTTGTCATGCATCTTGCTAATGGACAGACCATGCCTGTGTTGCCAGGGCCTCCAGTACAGATGCCGTCTGTTATATCG
Seq A exon
CTGGCCAGACCTGTGTCCATGGTGCCCAACATTCCTGGTATCCCTGGCCCACCAGTTAACAGTAGTGGCTCCATTTCTCCCTCTGGCCACCCTATACCATCAGAAGCCAAGATG
Seq C2 exon
AGACTGAAAGCCACCCTAACTCACCAAGTCTCCTCAATCAATGGTGGTTGTGGAATGGTGGTGGGTACTGCCAGCACCATGGTGACAGCCCGCCCAGAGCAGAGCCAGATTCTCATCCAGCACCCTGATGCCCCATCCCCTGCCCAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170653-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.934 C2=0.922
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCCACTGGCTCCCTC
R:
CAGGGGATGGGGCATCAGG
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)