GgaEX1000643 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZ53]
Coordinates
JH376268.1:8008-10234:-
Coord C1 exon
JH376268.1:10135-10234
Coord A exon
JH376268.1:8956-9069
Coord C2 exon
JH376268.1:8008-8154
Length
114 bp
Sequences
Splice sites
3' ss Seq
CGTCGGTTCCTCCCCGTCAGCTG
3' ss Score
6.62
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTCGCCCACGGGTTCCCTTCCGCTCGTCGTGCAGCTGCCAAACGGGCAGACCATGCCTGTCCTGCCCGGCCCCCCCATGCAGATGCCGTCTGTGATATCG
Seq A exon
CTGGCCCGGCCCGTCTCCATCGTGCCCAACATTCCCGGCATCCCCGGGCCGCCCAGCAGCAGCAGCGGCTCCGTTTCCCCTCCGGGTCTCCCCGTGCACTCGGAAGCCAAAATG
Seq C2 exon
AGGCTGAAGGCCAGCTTGACGGCGTCTTCCTCGCTGAACGGCAGCAGCCTGGTGGTGGGCTCAGCCAGCACGATGGTGACCGCGCGCCCGGAGCAGAGCCAGATCCTCGTCCAGCACCCCGACGCTCCATCGCCAGCTCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003038_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.895 C2=0.980
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACGGGTTCCCTTCC
R:
TGAGGCTGAGCTGGCGAT
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]