DreEX0015457 @ danRer10
Exon Skipping
Gene
ENSDARG00000055481 | atf7b
Description
activating transcription factor 7b [Source:ZFIN;Acc:ZDB-GENE-030131-3028]
Coordinates
chr6:39620847-39623862:-
Coord C1 exon
chr6:39623769-39623862
Coord A exon
chr6:39621463-39621582
Coord C2 exon
chr6:39620847-39621035
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTATATATATAGCTT
3' ss Score
5.26
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
CTCGCCGTCTGGTTCTTTTCCTATGCTGATGCAGCTTCCAAATGGTCAGACGGTTCCTCTGCTGCCCAGTCCGGGGCAGACGTCAGTCATATCG
Seq A exon
CTTGCCAGATCATCAAACACAGTGCCCAATATCCCAGGGATTCCAGGCCCTCCTATTGGCGGAAGCAGCAGCGGCTCCTCCTCTCCGTCTGGATACAGTACACACTCTGATGCCAAGACG
Seq C2 exon
GTATCTCCCGCTCCTCCAAAAGGTGGACGCAGACGCCGCGGGGCTGATATTGAGCCGGATGAACGCCGGCGTCGCTTTCTTGAACGAAACAGAGCTGCTGCTTCTCGTTGCCGGCAGAAGCGGAAAGTGTGGGTCAGTGCTCTGGAGAAGCGTGCGGAGGAGCTGGCTAATGCTAACGTCTCACTTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055481_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.540
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0017016=bZIP_1=PU(70.3=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCCGTCTGGTTCTTTTCC
R:
CTTCTCCAGAGCACTGACCCA
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]