DreEX0015454 @ danRer10
Exon Skipping
Gene
ENSDARG00000055481 | atf7b
Description
activating transcription factor 7b [Source:ZFIN;Acc:ZDB-GENE-030131-3028]
Coordinates
chr6:39623769-39624459:-
Coord C1 exon
chr6:39624301-39624459
Coord A exon
chr6:39624070-39624224
Coord C2 exon
chr6:39623769-39623862
Length
155 bp
Sequences
Splice sites
3' ss Seq
CATGTTACTCGCTCTTGCAGGAT
3' ss Score
11.63
5' ss Seq
TAGGTACAA
5' ss Score
3.23
Exon sequences
Seq C1 exon
CATCCAGCTCTACAGACACCTACTGAGGTTAAAGAGAGGGAGGGGCCTCTTGAAATTGACTCCTCCCCTCCAGACAGCCCTGACTCCGCCTCCAGCATGACAAACAGCAAAGATACAGTTGCCATGGCAAAAGAGGCTATTGCCTTGAGGAAAGCTAAG
Seq A exon
GATGTTCCTCCACGAACTGCAGCAAGTTCCACCCCTACACCAACCATAGTGCGTCCAGGCTCGCTCCCACTTCACCAGGGATTTGACTCCATGAACCCAACTCAGCCTTCTCCCACCTCTGTTATTACCAGAACCCCTCCATCAAACAGACTTAG
Seq C2 exon
CTCGCCGTCTGGTTCTTTTCCTATGCTGATGCAGCTTCCAAATGGTCAGACGGTTCCTCTGCTGCCCAGTCCGGGGCAGACGTCAGTCATATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055481-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.991 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGCTCTACAGACACCT
R:
CGATATGACTGACGTCTGCCC
Band lengths:
253-408
Functional annotations
There are 2 annotated functions for this event
PMID: 25301550
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: two hybrid. ELM ID: ELMI003062; ELM sequence: RPGSLPL; Overlap: FULL
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: fluorescence polarization spectroscopy, protein array. ELM ID: ELMI003062; ELM sequence: RPGSLPL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]