GgaINT1000507 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4E7]
Coordinates
chr17:6795093-6795783:-
Coord C1 exon
chr17:6795673-6795783
Coord A exon
chr17:6795287-6795672
Coord C2 exon
chr17:6795093-6795286
Length
386 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
3' ss Seq
TTCTGCTCCTGTCCCAGCAGTTT
3' ss Score
6.77
Exon sequences
Seq C1 exon
AGCTCCACACAGGAGATTGGAGAAGAGCTGGAGGATGGTGTAATCTACAGCATATCACTGCGCAAAGTGCAGCTCCATCACACAGCCAACAAGGGGCAGCGGTGGCTGGGG
Seq A exon
GTAAGCAGGGTTTTTTCTGCCAGACAGACCTGATATCAGGGCTCAGCAGAGCCCTTACTGGGCTACATCCTGCCCTCTTCATGTGTCTCCCCATGCTCATGTTCTGGGAGCTCCTTCCAAGCATAGTCTGAAAATCATGTATTTGTTTGGGCAACACTGAAGCCTGTTCTGGGACTTGCCAGGTGCTCAAGTCTTCTCAGTTGGGTTGTGGGCTACTTGGTGCCCAAGATGACCTTCCCTCTCCTCAGCCCCATCACTTGGAGTCCCATCACTGCAGGAAGTCCCCTCCGAGATCCATAGGATGCTTGTCGAGGTGGTGGGACCACTGTGAACTTGTATATATCCATCTTCATCCAGCCTGCTGACTTCTGCTCCTGTCCCAGCAG
Seq C2 exon
TTTGAGAATGAGTCGGCCTTAAACCTCTATGAGACGTGTAAGGTGCGGACGATAAAAGCTGGGACCTTGGAGAAGCTGGTGGAGTACCTGGTTTCAGCCTTCAAGGGCAACGATTCCACCTATGTCACCATCTTCCTGTGCACTTACCGGGCCTTCGCCACTACCAAGCAAGTGCTGGACCTGCTGCTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412:ENSGALT00000005397:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061815=RasGEF_N=PU(45.3=73.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACACAGGAGATTGGAGAAGA
R:
CTGTTGAGCAGCAGGTCCAG
Band lengths:
302-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]