RnoINT0123937 @ rn6
Intron Retention
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7117910-7119459:+
Coord C1 exon
chr3:7117910-7118020
Coord A exon
chr3:7118021-7119265
Coord C2 exon
chr3:7119266-7119459
Length
1245 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
CCTTTCTCTTGCTCCCCCAGTGC
3' ss Score
11.03
Exon sequences
Seq C1 exon
AGCTCTACGCAGGAGATTGGGGAGGAGCTGATCAACGGGGTCATCTACTCCATCTCCCTGCGCAAGGTTCAGCTACACCCAGGAGCCACCAAGGGCCAGCGCTGGCTAGGG
Seq A exon
GTAAGTATGGAGCGGACACCAGGAGGGTGGCCCTGGCAACTCCTTTTCAGGGTTTTCTGTTTGAGGGTCTCAGTCCCTCTGACAACTCTGGGCTCCCTCCCTCCCTTCCCCAGCCCATGCTCAAAGGTTCTGTGAACATACCTACCTACAGGGGAGAGGAGACACCATTGACTTTGCTTCTCATTTCCCATAAGGCAGTGCATATTCAAATATTTTGCTGGGTTTAATGCCTGTCCTCACATGTCACTCTTCCCCTCTTTCCTCCTAGTCCAAAATCCTCTCACATAGTAAGGCTACCCTTTACCCCCAGTGAATGGAAGTTTAGGTTTTGTAAACTTCCTCCTGTCTTAGGGTTACTGTTGCTCTAAAGAAACACCATGGCCAAAAGTAGGCTGGGGAGAAAAGGTTTCATGGGTTCATATTTCTACATCACAGTCCATCACTGAAGGAAGTCGGGACAGGAGCTCATAGAGAGCTGGAACCTGGAGGCAGGGCCTCACGTAAGAGCCATGAAGGGTGCTGCTTGCTGGCTTGCTCAGCCTGCTGTCTTATAGAACCCAGGGCCACCAGCCCAGGGATGGCCCTACCCACAATGATTGGGCCCTCCCATATCAATCACTAACTAAGAAATGCCTCCCTGCCTTGTACACAGCAGTCTAATGGCGGCATAAGTCTCTCCGTTGGGGTTCCCTTCTCTCAGATGACTCTAGTTTTGTCAGATACATCAAGTTGACAAAATTCTTCAACATAGAGTGCTCTGCACCTTTCTGACTCAGAAGTCTTTGGACCCCTTGAGCTAAGAAGCTGAGCCTAACCCAGCCACATGATATTCCAGAAGACAGCCCTGTCACCACAGCTGCCATGCATCACTGCTGTTACTCCCAGCGTGATTCTTCCCTGGGGCACTGAACCCATCCAGGAAATGTTCTGGGTCTTGATAGGATAGACCAACCCCATGACCCTGGAGTAAGCCAGTCTTTCCACCTCTAGGATAGGCTGGAACATCCCACCCTCCCTCCCCAAGCGTGTGTTAGAGAATGTTGTCACCTAAGAAACTACCCTGAAGGGTTCAATACTTCAAATTCTGCTTGAAAATACAAGGCTTTTTAAAATCAGAGACCTTCTTGTCCCGGCTTTGGCCACATTCTACGGAGGGTTTACAGGAAACGATCCGAGCTCCAGCCTCCAGAGCTTCCCTGAGAATATGACCCTGCCACTGACCGTGCCTTTCTCTTGCTCCCCCAG
Seq C2 exon
TGCGAGAATGAGTCAGCTCTGAACCTCTACGAGACTTGCAAGGTGCGCACGGTGAAGGCCGGTACTCTGGAGAAGCTGGTGGAACACCTGGTGCCTGCCTTCCAGGGCAGTGACCTTTCCTACGTCACCGTATTCCTGTGCACCTACAGAGCCTTCACAACCACTCAGCAGGTGCTAGACCTGCTGTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219:ENSRNOT00000013809:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061815=RasGEF_N=PU(47.5=73.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACGCAGGAGATTGGGGA
R:
TTTTGAACAGCAGGTCTAGCAC
Band lengths:
302-1547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]