GgaINT1001061 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14354875-14355834:-
Coord C1 exon
chr5:14355708-14355834
Coord A exon
chr5:14355131-14355707
Coord C2 exon
chr5:14354875-14355130
Length
577 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
AATTTGCTTCTCCCCTCCAGCTG
3' ss Score
8.67
Exon sequences
Seq C1 exon
AGATGTAAATATGACACCTGCCTCTGCAAGGACAATGAGGAGTGCTTGTGTGCTGCCCTGTCCTCTTATTCAAGAGCCTGTGCTTTCAAAGGGATTATACTGGGTGGCTGGAGGCAAAGTGTCTGCT
Seq A exon
GTAAGTAATGAAACTGTGATCCCTATGAAATTAATTAGCCACCATGTGGTGGAAACATCCGATGGAGTTAAAATAGGCAGTGCTTGCAATGTTTACTAATTCATGATATTTTCTCTAGCTTTTATTTGTTTGTGACACGTATTTCAAACTTAGAAAGCTATATTTTTCACTTTCACCTTCTTTCCCTACTTTCAGTAATGCTATTTCGATCTTTGACTAAGTGACTCCATCCACAGGAATGGATTGTAGCTTTTATATTGTGTTTGCATATCATTGCTTTTCATCAACAGTAAAACATTGGTGGGAATAGGAGCTTGTCTTAATGTGCTCTGTCTCTGGATGTCAATATGTGAAATAAATGAGTATGAAAGTAGCAACTGTTGGTAGCAGTTAAAAAGAAATGCTTGACTGATAAACTAAATCAGAGTAGTACTACTTATGAGTTATGGTAATTTGTACTCCAGTAAAATCAAAAGGAATACTTTTACCATTACATGCTGCACAGCCAAAGAAGCCAAAATAGAAACATCAAGGTTTCCTTGCACATCTTGTATATGAATTTGCTTCTCCCCTCCAG
Seq C2 exon
CTGATGAAGTGTCTGCCTGCCCAGGAAATCAAGTCTTCCTCTACAATCTTACAATGTGCCAGCAAACTTGTCGTTCCATTGCTGATGGTGAAAAGTACTGCTTGCAGGACTTTGCTCCTGTGGATGGCTGTGGCTGCCCAGATAATACATACTTGGATAATCAGGATACGTGTGTGCCCATCTCCAAATGCCCATGCTATTACAAGGGGTCATATCTGGAACCTGGGGAATATGTTACAAAAGATGGAGAACGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744:ENSGALT00000010869:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(56.0=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=67.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATATGACACCTGCCTCTGC
R:
CCAGGTTCCAGATATGACCCCT
Band lengths:
347-924
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]