HsaINT1023890 @ hg38
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7512]
Coordinates
chr11:1084592-1085323:+
Coord C1 exon
chr11:1084592-1084718
Coord A exon
chr11:1084719-1085067
Coord C2 exon
chr11:1085068-1085323
Length
349 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
CACCCCGTGGTCCTCTGCAGACA
3' ss Score
8.29
Exon sequences
Seq C1 exon
AGGTGCAAATATGACACGTGTAACTGTCAGAACAATGAGGACTGCCTGTGCGCCGCCCTGTCCTCCTACGCGCGCGCCTGCACCGCCAAGGGCGTCATGCTGTGGGGCTGGCGGGAGCATGTCTGCA
Seq A exon
GTGAGTGCCGTCCCCGTGGGCTGCATCCTGGGGATGGGGTCCGGGCTTTGAGCTCCTGGGACGGGGCTGGGGGCCCTGAGCACGGGTGGTCCAGGGAGAGGGGTTGGCCCCCTGCAGCCACGGACCAGGCTCCAGCTTCGTCGGCCGGTGGTAGCAGGAAACCAGCAACTCCTATAGCAAGGGGCGGCCACGTAGCAGGGGCAGAACCTGGGGTGGGCCTGGAGCTGTGGCGGCCGAGTGTGGGAGTGGGTCCCAGAGTGTGCACTCCCTGGCCCCCTGGCCACCCTGGGGATGGGAGCTGGGCGTCTGGCTCTTCCCGTCCCTCACACCACCCCGTGGTCCTCTGCAG
Seq C2 exon
ACAAGGATGTGGGCTCCTGCCCCAACTCGCAGGTCTTCCTGTACAACCTGACCACCTGCCAGCAGACCTGCCGCTCCCTCTCCGAGGCCGACAGCCACTGTCTCGAGGGCTTTGCGCCTGTGGACGGCTGCGGCTGCCCTGACCACACCTTCCTGGACGAGAAGGGCCGCTGCGTACCCCTGGCCAAGTGCTCCTGTTACCACCGCGGTCTCTACCTGGAGGCGGGGGACGTGGTCGTCAGGCAGGAAGAACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788:ENST00000361558:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGAACAATGAGGACTGCC
R:
ATCGTTCTTCCTGCCTGACGA
Band lengths:
358-707
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains