GgaINT1001221 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C788]
Coordinates
chr9:15160512-15161679:-
Coord C1 exon
chr9:15161517-15161679
Coord A exon
chr9:15160662-15161516
Coord C2 exon
chr9:15160512-15160661
Length
855 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTGATTCTTGATGGCTGAAGGTA
3' ss Score
2.38
Exon sequences
Seq C1 exon
CTAGCAAAAGCCTATGGCAACATCTGCACCCTGTGGCTGGGTCACAAACCCATAGTGGTGCTGTATGGCTTCAAAGCGGTGAAGGATGGTCTCACCACCAACTCAGAGGATGTTTCTGGGCGGCTACAGACCTACTTGTTCAACAGATTTTCTTCTGGAAAAG
Seq A exon
GTGAGATGCGTATATCTGCTGAAGGACTTTGTCTGCTGACAAGCTCTTAGTTCCCTGTTCACCCATTCCATTTGTTCATGAGGAGCAAATAAAGCCATTCTGCAGCGTTCCTGTTGTCTCCTAAGTCCCACTGTCACACATGCCTCCCAGAATCTTACCAAAGCCAGCAGTGGTTGTACTTGTTAGTCTAATTTATCCATTATTGGTGTTGTCTAAGTTTATGCCTTGCTTTGCAATAACCCATCTGATGCCTTTAAATCCTTCACCTGGAGTTGAGGAGCAGAGGCTGAAGTAATTCTTGAAGCTCCCAGTTGCTTGTTTACACAGTGGCTGCTGTGGAGAAAGCATGCACTGAGCTGTTAAACAAGAAATGGCCCTTTGGGGTGTCCCAAGGCACTGGAGTTTTAGATGTGTTAGTGAGACTGTAGGTGCAATGTGTCTTTGTTTAGAACTTCTTATTGTGCTGCTGTTTACATCAGGCACTGCTGAATTTCAGTGGATGGAGCATAGAGTTCTGTATTTGAAACAGGAGTGGCTGAACTGGTTTCTGCCAGCCTCGTATCCATCCAAGCATAGGGGAACAAGAATAGGAAGCCTGCAGACCTCTCCAATGGGCTCCTCGGAAAAGTCTATAGGCCTTGAGCAGCTCAGTGAGAGGGACCATCGTATTTCCTGGTGGGAGAAACCTGAACGTACTGTTGGCTGAGGAAAGCTCTCTGCCACCCCTGCAGTGGTGACGCAACACCTGTAGGGAGACGATACCCATGTGGGGATGTTGGCAAACACAGCTTGCAAGAGAGTATCAATGTGACATGAATATTAACATGGCATCAAATTGATTCTTGATGGCTGAAG
Seq C2 exon
GTATCCTGGTCTCAAATGGTCTTATCTGGAAAGATCAGAGGCGTTTTGGAATTGCGACTCTCCGGAAACTGGGAATGGGGAATAAAGGAATGGAACGTGGGATACAAGCCGAGGCCCGGCACCTGGTGGAGTTCTTCAGGAGCAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008178:ENSGALT00000013305:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATCTGCACCCTGTGGC
R:
TCTTTGCTCCTGAAGAACTCCAC
Band lengths:
294-1149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]