GgaINT1001358 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:611892-613246:-
Coord C1 exon
chrLGE64:612929-613246
Coord A exon
chrLGE64:612210-612928
Coord C2 exon
chrLGE64:611892-612209
Length
719 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
TGTAGACAAAAATATCACAGTGG
3' ss Score
-0.57
Exon sequences
Seq C1 exon
ATGACACATCAACTCTTCGCCTGGTGAATGGCCCACATCGCTGTTCTGGTAGAGTCGAGGTGTTTCACAATCAGCAATGGGGAACTGTCTGCGATGATGGCTGGGACATGAATGATGCCATGGTGGTGTGCAACCAGTTGGGCTGTGGGGAAGCACTGTCAGCCACAACACAAGCTTCATTTGGTCGAGGGGCGGATCCCATCTGGCTGGACAGAGTTGCTTGCACTGGGAGAGAAAACACTCTCATACAGTGCAGGGCCAGACCCTGGGGAGTCAACGTCTGCACACATGAAGAAGATGCTGGTGTTGTGTGCTCAG
Seq A exon
GTGATGCTTATACTCACAGATATGGGGCTCCTGAATAGCATGGGTTGGATTTCCCTTACCCAAAAGCCATGTGCTCATGACCCTCTGGTGAAGAACCTTTGCCCAGCACCCAACATGACCCTCCCCTGATGCAGCTCCATGCCACTCCCTCAGGTCCTGTCACTGTCACCAGAGAGCAGAGATCAGTGTCTGCCCCTGCTCTCCTTTCATGAGGAAGCTGCAGGCTGCCATGAGGCCTCTCCTCAGTCTACTCTTGGCTGAACAAACTAAGGGAACTCATACATTTTGCCCTCTAGACCTTTCACCAGCTTTCTTCCCCACCTTGGCACGCATTTATTAATTTTATATTTGTTTTGATCTAACTTCAGTTTTTGTGGATGAATGTGTAAGAGGTTGATATCCTTTTGTGCTTTGGGCTGCACTGAGACTGTGTGGGTCCCATAGGATCCCAGAGGAAGAGTAAGGCACCATGAAAGGAATTTATGTCCATCCTTGCAGGGTACTGAGTCAGGAGGCTGAAGGTAGGCATTGGTGCGTGTCACTGCAGGCATGCCAAGAGAGGGTCTGCCTACTGCTATGGCCAAGCATCTGCACTAAGTTTACACTCTGGTCACTCTTCATCATGTCCTTGCCCTTGCTATTGCCAGAAAGTTTCTCTGGATAGCTGTTCCTCTAAACACTGCATTACCCACCTCTGCTTGTAGACAAAAATATCACAG
Seq C2 exon
TGGAGGCAGCAGAGATCCGTCTAGTGAATGGCCCCAGCCGCTGTGCTGGCAGAGTGGAGGTGCTGCATAATGGACAATGGGGCACGGTGTGTGATGATGGCTGGAACCTCCAGGCTGCCACTGTGGTGTGTCGACAGCTGAACTGTGGCAGGGCTGAGTCAGCCCCCAGCCGTGCTCGCTTTGGGCAAGGCACCGGGCGTATCTGGCTGGATGACGTGTACTGTGCTGGGACTGAGGATGCCCTTCACCAGTGCCGAGCCCATCCATGGGGACTGCATAACTGCAACCACAGAGAAGATGCTGGTGTGGTTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103:ENSGALT00000014816:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=91.6)
A:
NA
C2:
PF0053013=SRCR=WD(100=91.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACAGAGTTGCTTGCACT
R:
CCCAGCACAGTACACGTCATC
Band lengths:
342-1061
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]