DreINT0144199 @ danRer10
Intron Retention
Gene
ENSDARG00000096083 | si:dkey-21h14.8
Description
si:dkey-21h14.8 [Source:ZFIN;Acc:ZDB-GENE-110913-34]
Coordinates
chr4:11060011-11060631:-
Coord C1 exon
chr4:11060326-11060631
Coord A exon
chr4:11060086-11060325
Coord C2 exon
chr4:11060011-11060085
Length
240 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TATTTGTATTTATATATTAGAAG
3' ss Score
3.11
Exon sequences
Seq C1 exon
AGTTTAAAGAGATCAGGTTAACTGAGGGCTGTGAAGGGAATGTGGAGGTTTTCTACAATGGATCCTGGGGAAATGTGTGCTGGAATCAGATGGAAATAGACACAGTGAGTCTGATCTGTCAAGAGCTGAACTGTGGAAGATCTGGTGTTTTGTCTGATTCAACATCAAGGCTTAAATCAGCTCCTAACTGGTTGGATAAAGTAACATGTCGACCACATGATTCAAATCTGTGGCAGTGTCCATCTTTACCCTGGGGACAAAATATCTGCAATGATGAATATGAAGTGGCCAAAATCAGCTGCTCAG
Seq A exon
GTAGGATGATAGTTCAATAATATATGATCTTAATCATATATTCATGCTTCTTCACATATAAGTTTACTTTATGTCTGAATAATTAACAATTATGATTAGGAGAGAGCAAAATAATTTTTGAAAGTGCAATGTTTCGACACATTCAGATCTAATTACAGATTACAAATGTAATTTCATAATTTGTTCAGATTTCTATTTATATTTTTTATTATTTTTTTTTTATTTGTATTTATATATTAG
Seq C2 exon
AAGAGCAGGCTCGAGATTCTTGGAGTAATTTGACATGTTCTACGTCACCATCTCTTTACCATAGACAGTGTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096083:ENSDART00000150760:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=93.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGAAGGGAATGTGGAGG
R:
CCAAGAATCTCGAGCCTGCTC
Band lengths:
302-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]