GgaINT0003879 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:21794297-21795189:+
Coord C1 exon
chrUn_random:21794297-21794611
Coord A exon
chrUn_random:21794612-21794869
Coord C2 exon
chrUn_random:21794870-21795189
Length
258 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
GGAGGTCACTGCCTCTGCAGACA
3' ss Score
3.9
Exon sequences
Seq C1 exon
AATTCATGGCCCTGAGGCTGGAGAACAGCGATGGCTGCTCCGGGCGCCTGCAAGTTTTCTACAATGGGACGTGGGGGAGTGTTTGCTCCAACTCGATGACTCCTCACACGGCGAAACTGGTGTGCAAGGAGCTGGGCTGTGGGGATGGAGGGACCCAGGAAATCAGCATCTTCTATGGCAGGGTGAATGGCACCGCGTGGCTGGATCACGTGCAGTGTGGGGAGAGCAACAGCTCCTTCTGGCAGTGTCCCTCTGATCCCTGGGAACTGCAGTCGTATGATGATGTGCGAGACGAGGCCAACATCACCTGCAACG
Seq A exon
GTAAGCGAGCCACCCGGGCACAAGATCCTGCTTCCCTCACCATGACCAAGGCGTCACGGGGAGGTGCAAGCAGAGGTCCTCCCTGCTGTCCTCTGCACAGGTTCCTTCACTGCTACATTTCCTTCTGCAGGGAGAAAGCCGGAAAGGACGCCGGTAGCTGCGTGCCCCAATTCCACGAGCTGCACAGGTGGGAGCTCCTTCTCTGTGTGACTTCTGGCCCAGTCACGCTGGTGCCATGGGAGGTCACTGCCTCTGCAG
Seq C2 exon
ACAGGGAGAAGATCCGTGCTGTGGGAGGCAAGGATGGGTGCTCGGGCAGAGTGGAGGTCTGGCACCGTGGCTCCTGGGGAACTGTGTGCGATGACTCGTGGGACATGCAGGATGCCGAGGTGGCATGCAGGCAGCTGGGCTGTGGCCCTGCGGTGTCTGCCCTGGCCGAGGCTGCGTTTGGGGAGGGGACAGGACCCATCTGGCTGGAGCAGGTGGAGTGCAGGGGCACGGAGCCATCTCTGCAGGCTTGCTGGGCCCGGACTGGGGATGGCGGTGCCTGCCGGCATAAGGAAGATGCAGCTGTGAACTGCTTGGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022426:ENSGALT00000036004:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=93.4)
A:
NA
C2:
PF0053013=SRCR=WD(100=91.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTGGTGTGCAAGGAGCT
R:
GAGTCATCGCACACAGTTCCC
Band lengths:
300-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]