GgaINT1001435 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C1A5]
Coordinates
chr6:30887063-30888733:+
Coord C1 exon
chr6:30887063-30887374
Coord A exon
chr6:30887375-30888421
Coord C2 exon
chr6:30888422-30888733
Length
1047 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TCACTTTTGGCCTTCCAAAGACA
3' ss Score
5.25
Exon sequences
Seq C1 exon
AACCAACCCTGAGGCTAGTGAATGGGCAGAACAGATGCCAGGGCCGCGTTGAAATATTTTACAATGGAGCATGGGGAACTGTCTGTGATGACTCCTGGGACATAGACGATGCCAACGTGGTCTGCGTTCAGCTCGGGTGTGGACGGGCCACTGGTGCCGTGGGGGCAGCCCAGTTTGGTGAGGGCACAGGAGACATCCTGCTGGATGAAGTGCAGTGCCGAGGGAACGAGGTTCTCCTCTGGCAGTGCTCCCATGATGGATGGCTCAACAGCAACTGCCTTCATCAGGAAGATGCCGGTGTCATCTGTGCAG
Seq A exon
GTAACTTGAGATTTATTGGCATTAGTGATTAATAATGGTTATAAGTATAAGCCAGAACGAGGTCTGGGTGCTCAACAAATGGCAGCTGAACTATCAAATCATCATCAAGCTATACAGGACATCCCCAAACTATTCCTCTGCATTTCAGCAAATACTTCTTAAGAAAGCACTATGACCCACCCACTACCTTTCGCATTCAAAAATCTTCACATAATTAGCTCAATTAGACAGTTATGTTTCCTTCTTTCTGTAGAGTATAATGCCATTCTGAGACTTGTCCATCTGGCCATTCCCGTTGCTTCCTAACTAAAGGATGAATTCAGCTGATTATTCCTAAGATCATTGAGAAAATTACCAACCATTTTCAGATGCAGTGTAAAATTGGGTCTTTCATGAGACATATTACTTGATGTGAAAATACATAGCACCTTACATTTTAAAATATAGATTGGCTTATATAGACAAATCCCCAGTGTGCTGAGGGTTGGTTTTGTGTTGTATAGGAGTGTAGGTAAAGAGGGATGTTTTCTACCCACTTTGTTGGGTGCAAGTTTGTTTAAAAAGTGATCTTTCTCACTCTGCTGTTTCTTTTATTTCAGGTTCTTTGATGTCTGAAATTCCTGGTAATTTTCATCTCATATATCTTCATCTAGTTTACTATGTCATTTTACCTAGTGTAGTCATTCAGTATATACAGTTTATGAAGAAGAGTATTTACAAGTATCTTTGTCACGGTATGATTTTGATGTATGTATATCAAACATTTCTGAATGCGCATCCCCAGAAGTTTTTAACCGTATCATACATTAATCACAACCTCTTGTGTTAGGAATATGCTGTATCTTCAAGTTTTTAATGTGTTCATATCAGTTAAATTCCACAATTTTTCATTAATCCAAAAATACAAGTTGATAAATATTTTTGGCCAATCATCTGCTATCTTTGGATAGTACCTACTATTGTCTCAAGTGTGTAACAGCCTACTTAAAACCTCACAATACGGGAGGATCCCTCCTAAATCACTCTTTCACTTTTGGCCTTCCAAAG
Seq C2 exon
ACACGTCCCTGAGGCTGGTGAACGGGAGGAACCGATGCGAGGGCCGTGTCGAAGTCCATTACCAGGGCAACTGGGGCACTGTCTGCGATGACTCCTGGGACCTGCAGGATGCCCAGGTGGTGTGCAGCCAGCTGGGCTGCGGCAGGGCTGTTTCTGCACTAGGAAATGCCAACTTTAGCCAAGGCTCAGGAGAGATCCTCCTTGACGACGTGCAGTGCAGAGGGAATGAGGCCTACCTCTGGGAGTGCCCCAGCAGAGGGTGGGCAGTCCATAACTGCGCACACGTGGAAGACGCCGGTGTTGTTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009588:ENSGALT00000015621:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=93.3)
A:
NA
C2:
PF0053013=SRCR=WD(100=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATGGGGAACTGTCTGTG
R:
CAGGAGTCATCGCAGACAGTG
Band lengths:
343-1390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]