GgaINT1001473 @ galGal4
Intron Retention
Description
NA
Coordinates
chr8:19315964-19317233:+
Coord C1 exon
chr8:19315964-19316056
Coord A exon
chr8:19316057-19316281
Coord C2 exon
chr8:19316282-19317233
Length
225 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGC
5' ss Score
6.58
3' ss Seq
TGACGCCGCTGTTCCCGCAGAGG
3' ss Score
9.92
Exon sequences
Seq C1 exon
ATGGCGGCGGCCGTGGACGAGAGCGCGCTGCCCTCCATCTCCACCTTCACCAACCTGTTGCCGCTGGAGGAGCGGCCCCCCGACATGATGCAC
Seq A exon
GTAAGCAGCGGGCACTGGGAACGGAGCGCCGAGGGAGGGGGGTGTAGGGTCCGGTGCTCCTGGGTCCGGTGCTCGGTCCCCCCGCCGTCGGAGGGCGCTGCTGGAGCTGTGCCGGAGCGGTGCGGAGCCGTCGGGTGGGCTGGGAGAGCCGCCGCCCCGGGCGGAGGGTACGGGTGGGGGGAGCTGTGCCCCGCTGTCCCGTTCCTGACGCCGCTGTTCCCGCAG
Seq C2 exon
AGGATGCTGCAACACGACGGCTCCGCCGCTGCCGTGAAGCGGGAGGAGGACGAGTTGGGCAAATTCGTGGATTTGGACTTCATCCTGGCGCACACCAGCAGCGGCGGGCAGGGACCGCCCGGCCCCAATTACCCTCTGCCTGAGACCCCCGAGAGCTGCGGCACCACGTACGACAGCGACGGCTCCTACCCCACGCCGGGCAAGTTCCCGGCGCCGTACCCCGACGGCCAGAGCCACAGCTACGTGGCCGAGCTTCTCACCCCGGACCTGCCCGCGCACTGCGACCTGCAGCGGAGGGAGTACACGGAGCTGCGGGTGCCCGGCGGCCCCCACCACCACCCGGCCCTGCACCCGGCCCTGTCCCGCCCGCTGCCCCTGGACCCGTCGCAGCCTTTCGGGCCTCGCATCAAGAAGGAGCAGCCGGAGGAGCGCGCCTGCATGCTGGGGTTACCTGGCGGCGAGTACCTGGGACCGGGAGGTGGTGAACACAAGCCCCCCCGCATGGCGCCGGGCCCGGTGTCGGGGCCACCGCTGCCGTACCCTGGTTTCGCCCACGGCCGCTTGGGCCCCCCCGAGGAGCCGCTGCCCGGTGCCGACCCGCACCTGCTGGCCGACCTGCCGCCCCACTATGCCGTGGCCCCGCATCGCTACGCGCCCCACTTCGCCCCCCAGCCGCCCCCTCAGTTTCATGGACACTTCAGTGTTTTCAGGGAGCCCCTAAAGGGGCCGGGGCCGGGCCCGGCGGGGCTGCCCGGGCTGCTGGTCACGCCGCCCAACTCCCCGGTGCTGGAGTATTTTCCGGCCGGGGGCCCCCCCGAGGACTGCAAGCCCAAACGCGGCCGCCGCTCGTGGGCGCGCAAGCGGACGGCGACGCACAACTGTGAATACCCGGGCTGCGGCAAGACGTACACCAAGAGCTCCCACCTCAAGGCGCACATGCGGACGCACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010101:ENSGALT00000033175:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=NA C2=0.855
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=PU(35.7=3.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCACCTTCACCAACCTGT
R:
CTCGGCCACGTAGCTGTG
Band lengths:
308-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]