GgaINT1001566 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P341]
Coordinates
chr7:21631304-21631628:+
Coord C1 exon
chr7:21631304-21631409
Coord A exon
chr7:21631410-21631495
Coord C2 exon
chr7:21631496-21631628
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCCACCCCGTCCCCTCGCAGGGT
3' ss Score
10.69
Exon sequences
Seq C1 exon
ACATCCCCGACGAGGCTGCCTGCAGCACTGCCCTGCGGCACGTGGTGGGCAAACTGCCCGCCGCCAACAGGGACACGCTGGCCTTCCTCATGCTGCACCTGCTCAG
Seq A exon
GTGAGAGCTGCAGGACTCCAGCCCACCCCCCGCATAGAGGTGGGCACCCTCCAGCCAAGCCCTGTGCCCACCCCGTCCCCTCGCAG
Seq C2 exon
GGTGTCGCGCAGCCCCAGCTGCAAGATGGACGTCCTCAACCTGTCCCGTGTCTTCGGCCCCACGCTGGTTGGGCACGGCTCTGCCAACCCCACGCCGCTCGTCATCATGGAGGACACGCCGCGGCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011252:ENSGALT00000018359:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(25.7=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(22.8=68.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGTGGGCAAACTGC
R:
TGTCCTCCATGATGACGAGCG
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]