GgaINT1001722 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF29]
Coordinates
chr1:75728100-75728639:-
Coord C1 exon
chr1:75728540-75728639
Coord A exon
chr1:75728139-75728539
Coord C2 exon
chr1:75728100-75728138
Length
401 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGA
5' ss Score
5.2
3' ss Seq
TCTAAGTAGTTACATTCCAGCAA
3' ss Score
-2.51
Exon sequences
Seq C1 exon
CTGCTAGGCTTAAAAATCTTCACTAGCAACAAAATCCATAAGCCTGAAGTCTGCCAGCATTACACAGCGCATATGATGGAAAGGAGTTACAGTGGTTCTA
Seq A exon
GTAAGAAGACCTGCTTCATTTTATCTCCACACAGTGACCTAAAATTTACCATCATGTTTCTTTCTTCTCCTCTACTTCTTTGAATATTAATTACACTAGAACAATCAAACTCTGTACTAAGATATGTCAACCTAATTCAGGATCACTTCCTTCTGGATTCAGTCCTGAAATACGAAACTTATACACCTTATCCTCACCTAAACAGATGTGTCTGGTTAAGACTGTGTGCTCAGTGAATCACATGTCAGGCTCTACAGCAAGGATCCTGAAGACACTAAGACCATCCATCTACATTGGATGGACTGCCAAGCATGAAGTGTAGGCTTTGTTCCACCAAATCAGAGTTCGTCTATAGAAACCTAAACAATGACAGTCTCTACTTCTAAGTAGTTACATTCCAG
Seq C2 exon
CAATAACTAGGGAAATAACTATGGCAAAAGTAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926:ENSGALT00000019456:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]