GgaINT1001730 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75817331-75818434:-
Coord C1 exon
chr1:75818332-75818434
Coord A exon
chr1:75817384-75818331
Coord C2 exon
chr1:75817331-75817383
Length
948 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
ATTTCTTTTTTTCTTTCCAGATG
3' ss Score
12.48
Exon sequences
Seq C1 exon
CTCTCCCAGAAAGAAGTCAGCTTCTCCTTCAGTGTAGAACAAAGTCTACCTGTGTCAGATATCAAGCCAGCACCAGTACATATTTATGATTACTACGAAACAG
Seq A exon
GTAGGCAATCTCTGTAAACCTACAAAACCTATGAAACCAAGGTATTTATTTCAGCATTTGTTAAGTGAGGACAGTGGATTTTCCTTTGCTGTTTCTGTGTAAGCATCTGTTTATGTTTCTGCATTTGCAGCTTTTATTTCTCTTTGTTAGAGAGCAAGCTAGCAATTTTTCTGCTTTTTGTTACTGGACTGCATGGAGTTTGCAGAAGCATAGACAGAAGCTGTCCCTCATCTTTTCATTTGTTGCTTCATTCAGGCATAAAGCAGATAAGAAAGTGATGTGTCCTGATTTGCTTTCTAGCAAACTACATATGGAAAGAAGTGTGGTTCCACTTTCTTTCCCCAGCTTGGACATGATAGTTAAGATAATAACACAAAGGCAGCAGTGTTCCCAACTTCCTCAGAATAGCTTGTCTCATTTTTTTTACATTGCCACAGTAGGCTGTGGTCAAAGAACTATTCTGGACTTTAATTGCTTAAGTAGGAATGACAGTCCCACTGAACTCAGCAGGAGTTTAATCACCTAACTAGAATATGAAGTGCCTGACCACCTTTCTACATCCAGCCTCAAGGAACTATAAATGCATCAGACATTACCAATTGTGGCAGGTTTGTTATCAAAACTGTGCTTAGAGTTCCCATAAGCTTTTCTCAAGATTAGTATAACTTCTCAGCAGAATAGCAGTAATATCCAGAGAATTCTTCCTGAATGCCTATTCAGCCACCTTATCTATATACCATGTAGTCACAGCAATGATGCACCCTAACAAACATTGACAGAGGAGTGCATTATGCACTGACCATGTAAGCACCTTGAAACTGGAAGAGCTTCACAAAATCTATCAAATGTTTTCTGATTCAGCATGTGTTAATCACAGGTACGCATGGACTGGGGTCAGAATGATTTCTTACTTTAATGCAACTGTCAGATTTCTTTTTTTCTTTCCAG
Seq C2 exon
ATGAATATGCCTTTGCAGAATATAAAACACCTTGCTCTCCACCTTCCAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.118
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.2=100)
A:
NA
C2:
PF076779=A2M_recep=PD(7.9=38.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]