RnoINT0000081 @ rn6
Intron Retention
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161866078-161866852:-
Coord C1 exon
chr4:161866753-161866852
Coord A exon
chr4:161866128-161866752
Coord C2 exon
chr4:161866078-161866127
Length
625 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
ATGCTCTTTTTATTTTCCAGATG
3' ss Score
11.26
Exon sequences
Seq C1 exon
GTTCCCAAGGCAGCAACCAGCTTCACCTTCTCTATTGAACAAACCAACCTTGTGGTCAACATCCAGCCAGCCCCAGTCACGGTCCACAGCTATGAAAAAG
Seq A exon
GTAAACAACCACATCACAGCCATTGAACATGTCTGTAACTCACACTCTCTGAGCCACGGCACACCCCCAAACCATGATGGTTTCATGTTATAGGATAATTCTTTTATTATTTCATGATGTGGATTCTGACTGTGACAGTTCCCGGGATATCTTAACACTCAGAATCTCTTTTCTGTATTGTGCAAAGACTCATCCTTAACTTAAATATAAATGATCGCTAACCTTCCAAGCCTTTTTCATTATCATTGTTACTGAGTTAAAGATTTACTCTTGCATGGTGCTTCTATGATTTCAACTTAAGAATGGAAGAGAAAACATTATAGGGAAAAATGTAATAGATTGTGCTTCAAAGCAGTGACTTGTGGAGACCATGACACATCCCTTGGGACATGAGCTTGGTTAGTTTCTTGTTGGATGCCATTCAGAGTTTGTCAAGGAGTAGACAAACACCACCTGTCCTTTACTAATTTAAGGCACCCTGTCATATGACTTCCTTTAGGGGAATCTAAGGCTCGTTAAATGGATGAGTGATTACTTCTCTTGAAAAATGACTGGAAAGATTTGGTTTAGTGTCTTACACACAGTTGGAAATCTGGTAAAGACAAATGCTCTTTTTATTTTCCAG
Seq C2 exon
ATGAATATGCTTTTGATTCTTACAACATCAATAGCATTTCAGATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247:ENSRNOT00000009557:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(37.9=100)
A:
NA
C2:
PF076779=A2M_recep=PD(8.0=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]