GgaINT1002103 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NIC1]
Coordinates
chr10:7128043-7129785:+
Coord C1 exon
chr10:7128043-7128053
Coord A exon
chr10:7128054-7129740
Coord C2 exon
chr10:7129741-7129785
Length
1687 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAAA
5' ss Score
-3.49
3' ss Seq
AATATCAGTATTTATTACACAAA
3' ss Score
-5.63
Exon sequences
Seq C1 exon
CTGTGTTAAAA
Seq A exon
GTGAAAGGATTATGAAGCATAAATAGAAGAATCTTTTCTGTCTGTAAATTCCGTTACCACTTTAGGCATGTTCTTCGGTGGTGTTTTGTTTTTCTTTCACTTTTCCTTCTTTTTAATGCTTTAAAATGCTTAGAATGCATTTCCTACGGTTTCAGTGGGGATCGCCTGTTTAAGAATTAGAGAAGATCTGTAATTTCTTTATTTTGCTTCACAAAATGTTACATAATTTTGGTTTTCATTTAAAGTACAACAAAAAGAAAAGAACAACAACCATAGCTCTTATGACTGGAGGTGGAGAATACAGGCAAAATAGTGATGTTGGTTTTAGCTCTCAGTTGTTACTCAGAGTATAAAGCAAGATTTGTCAGAACTGTGAGTTGCCTTTCACTGTGGTTTGGGCCACATGGAAGCTCTGGTTTACTGGGTGCTGAAGAACCAAAAATTTAAATAGTTAAATTCAATTATTTAAAAACAGAGCATATGAGACTTAGAGATAAATCTTTCTTTCCATATAGTTCCTCTGAGTGGGGAGGAGGATAAGAGCTGAGGACCATGATGGGTAGAGAAGAAGGTTCTGTAGTAGACCAGCTAGAGCAGTGTAGATCCATACTTTGCAAAATGCAGAGGTGGAGACCTGTAGTGTGCAATAATTTGAGGTTGGAAAATGTTTCTTACCGTGGGTTTTATGGCTGTGGGGATAGTGTGACAGGAATACAGCAAAGTGTGATAGAAATATAGCAGGGGCTCTTTCAGAAGATAGCATAAGCTTAGCCTGACCATACACCTTCAAGATATTTGCTGCATGATTTGGTCTCGCTGAAGCAAAATATACCACTTCTGTGGAGGCAAATATTATATTAACAATATATAATACTGCTTATGCAGGTTTAAAATATCTTAATAGTTTGTGATACAAGTGATTGAGTTGCTTATATTTTTGTACAAACAAAAACTTATTTTATGATAAAACCAGAATTCACTTAGTTGTACTAGGATAAAAACCAAGTTTCTTAATTTTTTAAGCACAGATAATTTTCTTAAGAGTAAGATAATATATGGATAGAATGCTCTATAATATGGGAGAAGCTTTTAGAAGACTGCTTTGACCATTTCCCACTGGCAGTTTTTCAAAAATTTACTTTTTCTACTCTTCTTTAAAAAGAAAAACAAAAAAATCTGATAATGTTGTTCAGAGTTCAAAAATTATTTCCTTGGGTGGTTGCATTACAATATACTCAGGTTTTTCCTGTGATGAGCATTCTGGTAAGAGTCTTCTTTATAATAAAAATATCTGTAGGGCTAAAATGCTGTAATGCTTTAATATGCTAACCCCAGTTTTCTCTTTCTTGCTTTTCTGTTGGCTTTTTAGCAAAACAAATTTTGTCTAATTAGTTGTTCTGGGTTTTTTTGTTTGCTTTTACCTTCCAAATAAAATGCTGTCAGGACACAGTTCACCAGATCCCATTCAGTAAGGTGTAATTACAATTGCATATGTGAAAAAGGCTACAAAGGTTGCTTTAAAGTTTTGTTTTTTTTCCCTTAACTTGCAAGATTTTGCAAACATCTGTATTAATATCCACTCTCTGCTTCTTAGTAGATGTATGGAATGTCAGTGTGAATTTGTCTCTGCAACTTTATTGTAATCAATTGGTCATGGATAAGAATAAAATATCAGTATTTATTACAC
Seq C2 exon
AAAATTTCAAGACGTAGTTTATCTGAAGGAAAAACAAACACCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375:ENSGALT00000023225:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]